Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LF296_RS16780 Genome accession   NZ_CP085083
Coordinates   3572603..3573829 (+) Length   408 a.a.
NCBI ID   WP_004774089.1    Uniprot ID   N9Q9Z3
Organism   Acinetobacter vivianii strain KJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3567603..3578829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS16745 (LF296_16745) rimP 3568209..3568733 (-) 525 WP_004774094.1 ribosome maturation factor RimP -
  LF296_RS16765 (LF296_16765) secG 3569361..3569690 (-) 330 WP_005255466.1 preprotein translocase subunit SecG -
  LF296_RS16770 (LF296_16770) tpiA 3569703..3570494 (-) 792 WP_272654995.1 triose-phosphate isomerase -
  LF296_RS16775 (LF296_16775) pilB 3570866..3572578 (+) 1713 WP_004774090.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LF296_RS16780 (LF296_16780) pilC 3572603..3573829 (+) 1227 WP_004774089.1 type II secretion system F family protein Machinery gene
  LF296_RS16785 (LF296_16785) pilD 3573835..3574695 (+) 861 WP_047431455.1 prepilin peptidase Machinery gene
  LF296_RS16790 (LF296_16790) coaE 3574697..3575302 (+) 606 WP_047431458.1 dephospho-CoA kinase -
  LF296_RS16795 (LF296_16795) - 3575299..3576210 (-) 912 WP_272654996.1 DMT family transporter -
  LF296_RS16800 (LF296_16800) rlmB 3576242..3576988 (-) 747 WP_004774084.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LF296_RS16805 (LF296_16805) - 3577182..3577508 (-) 327 WP_004774082.1 pyrimidine/purine nucleoside phosphorylase -
  LF296_RS16810 (LF296_16810) - 3577700..3577891 (+) 192 WP_272654997.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44936.44 Da        Isoelectric Point: 9.8806

>NTDB_id=615129 LF296_RS16780 WP_004774089.1 3572603..3573829(+) (pilC) [Acinetobacter vivianii strain KJ-1]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=615129 LF296_RS16780 WP_004774089.1 3572603..3573829(+) (pilC) [Acinetobacter vivianii strain KJ-1]
ATGGCAGCTAAAAAAGCGCAAATGATGCCAACTTTTGCTTATGAAGGGGTCGACCGGAAAGGAGCAAAAATTAAAGGGGA
ATTACCAGCTCGTAATATGGCTTTGGCGAAAGTCACCTTACGAAAACAAGGCGTCACCATTAAGAATATTCGGGAAAAGC
GCAAGAATATTCTTGAAGGTCTGATGAAGAAAAAAGTCACGACGCTGGATATCACCATTTTCACACGTCAATTGGCAACC
ATGATGAAAGCAGGCGTACCACTGGTACAAGGCTTTGAAATCGTTGCAGAAGGTCTGGAAAACCCTTCTATGCGTGAAGT
GGTATTGGGGATCAAGGGTGAAGTTGAAGGCGGTAATACTTTTGCTGGTGCCTTAAAAAAATACCCGCAATATTTTGATA
ACCTGTTCTGCTCGCTGGTGGAATCTGGTGAACAATCAGGTGCGCTCGAAACCATGTTAGACCGTGTTGCGATCTATAAA
GAAAAAAGTGAGCTGCTCAAACAGAAAATTAAAAAGGCCATGAAATATCCAGCTACCGTTATTGTAGTGGCTGTAATCGT
GACCATTATTTTGATGGTTAAAGTTGTACCTGTGTTTCAGGACTTGTTTAGCTCTTTTGGTGCAGACCTCCCTGCGTTCA
CCAAAATGGTCGTGAATATGTCCAAATGGATGCAAGAGTACTGGTTTATCCTGATTATTGTAATTGGTGCAATCATTGCA
GCCTTTTTGGAAGCAAAAAAACGCAGTAAAAAGTTCCGCGATCTTCTGGACAAAATGGCATTGAAAGCGCCTATTTTTGG
GGATCTGGTTTATAAAGCGATTATTGCGCGCTATAGCCGTACCCTAGCAACGACCTTCGCCGCAGGTGTACCGCTGATTG
ATGCACTAGAATCAACTGCGGGGGCGACCAATAACGTCATTTATGAAGAAGCGGTCATGAAAATTCGTGAAGATGTCGCG
ACAGGTCAGCAACTACAATTCGCCATGCGTGTTTCGAACCGTTTCCCTTCAATGGCGATTCAAATGGTCGCGATTGGTGA
AGAGTCCGGTGCTTTAGACAGTATGTTGGATAAGGTTGCCACTCATTATGAAAACGAAGTCGACAATGCCGTAGATGGTT
TAACGTCTATGATGGAACCGTTAATCATGGCTATACTTGGTATTTTAGTCGGTGGCCTCGTTGTTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9Q9Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

93.627

100

0.936
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404