Detailed information NTG0615130

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LF296_RS16785
• Genome accession: NZ_CP085083
• Coordinates: 3573835..3574695 (+)
• Length: 286 a.a.
• NCBI ID: WP_047431455.1
• Uniprot ID: A0AAJ6NIA0
• Organism: Acinetobacter vivianii strain KJ-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3568835..3579695

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LF296_RS16765 (LF296_16765)	secG	3569361..3569690 (-)	330	WP_005255466.1	preprotein translocase subunit SecG	-
LF296_RS16770 (LF296_16770)	tpiA	3569703..3570494 (-)	792	WP_272654995.1	triose-phosphate isomerase	-
LF296_RS16775 (LF296_16775)	pilB	3570866..3572578 (+)	1713	WP_004774090.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LF296_RS16780 (LF296_16780)	pilC	3572603..3573829 (+)	1227	WP_004774089.1	type II secretion system F family protein	Machinery gene
LF296_RS16785 (LF296_16785)	pilD	3573835..3574695 (+)	861	WP_047431455.1	prepilin peptidase	Machinery gene
LF296_RS16790 (LF296_16790)	coaE	3574697..3575302 (+)	606	WP_047431458.1	dephospho-CoA kinase	-
LF296_RS16795 (LF296_16795)	-	3575299..3576210 (-)	912	WP_272654996.1	DMT family transporter	-
LF296_RS16800 (LF296_16800)	rlmB	3576242..3576988 (-)	747	WP_004774084.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LF296_RS16805 (LF296_16805)	-	3577182..3577508 (-)	327	WP_004774082.1	pyrimidine/purine nucleoside phosphorylase	-
LF296_RS16810 (LF296_16810)	-	3577700..3577891 (+)	192	WP_272654997.1	hypothetical protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32015.44 Da
• Isoelectric Point: 7.4262

>NTDB_id=615130 LF296_RS16785 WP_047431455.1 3573835..3574695(+) (pilD) [Acinetobacter vivianii strain KJ-1]
MQQIIYYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPKMMEQEWHQECQMLLNPEQPIIDQSKLTLSQPASTCPKCDSA
IRWYQNIPVISWLALRGKCGSCQNPISIRYPFIELLTMLCSLVVVAVFGPTLKMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSYAIYTSASLAIWGYIIGFLCLWIVYYIFKLITGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSM
VGAIIGIILMKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=615130 LF296_RS16785 WP_047431455.1 3573835..3574695(+) (pilD) [Acinetobacter vivianii strain KJ-1]
ATGCAACAAATTATTTATTATTTTATTGAAAACCCAACTGCACTTTATCTTGCGGTTGGGCTTTTTAGTTTATGCATCGG
CAGCTTTTTAAATGTTGTCATCTTCCGCACCCCAAAAATGATGGAGCAAGAATGGCATCAGGAATGCCAGATGCTACTTA
ATCCAGAACAACCGATAATTGACCAAAGCAAACTGACCTTGAGTCAACCTGCTTCGACCTGCCCCAAATGCGACTCTGCG
ATTCGCTGGTACCAGAATATTCCTGTTATTAGCTGGTTAGCGCTGCGGGGTAAATGTGGAAGCTGCCAGAATCCAATCAG
TATTCGTTATCCGTTCATTGAACTGCTGACCATGCTGTGTTCACTGGTGGTGGTTGCTGTTTTCGGCCCTACTCTAAAGA
TGCTATTTGGTTTAGTGCTCACTTGGGTATTGATCACACTGACCTTTATTGATTTTGATACCCAATTGCTGCCAGACCGC
TTTACCCTTCCCCTAGCCGCCTTAGGTTTAGGGATTAATAGTTATGCCATTTATACCTCTGCCAGTCTGGCAATCTGGGG
TTATATCATTGGTTTTTTATGCCTCTGGATCGTGTATTACATTTTCAAATTAATCACGGGTAAAGAAGGCATGGGCTATG
GCGACTTTAAACTGTTAGCCGCCCTAGGTGCATGGATGGGGCCAATGCTGCTGCCTTTAATCGTGCTACTCTCTTCAATG
GTGGGTGCGATTATTGGTATTATTTTGATGAAAATGCGTGGTGAAAATCAGCCATTTGCATTTGGACCTTATATTGCAAT
TGCAGGCTGGATCGCCTTTTTATGGGGCGATCAGATCATGAAAGTTTATTTAGGTGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	83.566	100	0.836
pilD	Acinetobacter baumannii D1279779	83.566	100	0.836
pilD	Vibrio cholerae strain A1552	55.056	93.357	0.514
pilD	Vibrio campbellii strain DS40M4	52.434	93.357	0.49
pilD	Neisseria gonorrhoeae MS11	46.886	95.455	0.448