Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SII_RS01485 Genome accession   NC_022237
Coordinates   299388..299858 (+) Length   156 a.a.
NCBI ID   WP_020998325.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 294388..304858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS01460 (SII_0288) - 295832..296719 (+) 888 WP_020998321.1 hypothetical protein -
  SII_RS01465 (SII_0289) - 296712..297017 (+) 306 WP_020998322.1 DUF4176 domain-containing protein -
  SII_RS01470 (SII_0290) - 297121..297960 (+) 840 WP_020998323.1 hypothetical protein -
  SII_RS01475 (SII_0291) - 297970..298797 (+) 828 WP_020998324.1 hypothetical protein -
  SII_RS01480 (SII_0292) rpsF 299086..299376 (+) 291 WP_003074536.1 30S ribosomal protein S6 -
  SII_RS01485 (SII_0293) ssbA 299388..299858 (+) 471 WP_020998325.1 single-stranded DNA-binding protein Machinery gene
  SII_RS01490 (SII_0294) rpsR 299895..300134 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SII_RS01495 (SII_0295) - 300543..301052 (+) 510 WP_020998326.1 GNAT family N-acetyltransferase -
  SII_RS01500 (SII_0296) - 301204..301881 (-) 678 WP_003074532.1 DUF1129 domain-containing protein -
  SII_RS01505 (SII_0297) - 301897..302841 (-) 945 WP_003070861.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17435.15 Da        Isoelectric Point: 4.9008

>NTDB_id=61509 SII_RS01485 WP_020998325.1 299388..299858(+) (ssbA) [Streptococcus intermedius C270]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGSSPSANQVPNFSRDENPFGNTNPMDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=61509 SII_RS01485 WP_020998325.1 299388..299858(+) (ssbA) [Streptococcus intermedius C270]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTTATTAACGTTGTAATTT
GGCGCCAACAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAGTTACTGGTCGCATTCAGACACGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTTCAGTTATTGGAAAGTCGTGC
TAGTCGTGAAGGTCAATCTTCTGGCGGCTATGCTTCTAACAATTTTGGAAGTTCACCTTCTGCCAACCAAGTACCCAACT
TTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.66
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.647
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.949

0.391
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

69.872

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

69.872

0.378
  ssbB/cilA Streptococcus mitis SK321

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae D39

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae R6

53.211

69.872

0.372

Multiple sequence alignment