Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | NP446_RS25935 | Genome accession | NZ_CP101912 |
| Coordinates | 5493106..5493570 (-) | Length | 154 a.a. |
| NCBI ID | WP_003122079.1 | Uniprot ID | P17836 |
| Organism | Pseudomonas aeruginosa strain ATCC 27853 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 5488106..5498570
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP446_RS25920 (NP446_25920) | nadC | 5490616..5491464 (+) | 849 | WP_003122081.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| NP446_RS25930 (NP446_25930) | - | 5491645..5493030 (-) | 1386 | WP_003122080.1 | O-antigen ligase | - |
| NP446_RS25935 (NP446_25935) | pilA | 5493106..5493570 (-) | 465 | WP_003122079.1 | pilin | Machinery gene |
| NP446_RS25940 (NP446_25940) | pilB | 5493801..5495501 (+) | 1701 | WP_003122078.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NP446_RS25945 (NP446_25945) | pilC | 5495505..5496722 (+) | 1218 | WP_003107299.1 | type II secretion system F family protein | Machinery gene |
| NP446_RS25950 (NP446_25950) | pilD | 5496723..5497595 (+) | 873 | WP_016852118.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| NP446_RS25955 (NP446_25955) | coaE | 5497592..5498203 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| NP446_RS25960 (NP446_25960) | yacG | 5498200..5498400 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16277.67 Da Isoelectric Point: 8.9987
>NTDB_id=612368 NP446_RS25935 WP_003122079.1 5493106..5493570(-) (pilA) [Pseudomonas aeruginosa strain ATCC 27853]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSATPKDTQYDIGFTE
STLLDGSGKSQIQVTDNKDGTVELVATLGKSSGSAIKGAVITVSRKNDGVWNCKITKTPTAWKPNYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSATPKDTQYDIGFTE
STLLDGSGKSQIQVTDNKDGTVELVATLGKSSGSAIKGAVITVSRKNDGVWNCKITKTPTAWKPNYAPANCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=612368 NP446_RS25935 WP_003122079.1 5493106..5493570(-) (pilA) [Pseudomonas aeruginosa strain ATCC 27853]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTTGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAGGAGATTGTTTCCAGCGCGACTCCTAAAGATACCCAGTATGACATTGGCTTCACCGAG
TCTACTTTGCTAGATGGTTCTGGTAAGAGTCAGATCCAGGTAACGGACAATAAAGATGGCACCGTTGAGTTGGTCGCTAC
CTTGGGTAAATCTTCTGGTTCCGCCATCAAAGGGGCTGTAATCACTGTTTCGCGTAAAAATGACGGAGTCTGGAACTGCA
AAATCACCAAAACTCCTACAGCTTGGAAGCCCAACTACGCTCCGGCTAATTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTTGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAGGAGATTGTTTCCAGCGCGACTCCTAAAGATACCCAGTATGACATTGGCTTCACCGAG
TCTACTTTGCTAGATGGTTCTGGTAAGAGTCAGATCCAGGTAACGGACAATAAAGATGGCACCGTTGAGTTGGTCGCTAC
CTTGGGTAAATCTTCTGGTTCCGCCATCAAAGGGGCTGTAATCACTGTTTCGCGTAAAAATGACGGAGTCTGGAACTGCA
AAATCACCAAAACTCCTACAGCTTGGAAGCCCAACTACGCTCCGGCTAATTGCCCGAAATCCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
44.737 |
98.701 |
0.442 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
44.444 |
99.351 |
0.442 |
| pilA | Pseudomonas aeruginosa PAK |
45.985 |
88.961 |
0.409 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.073 |
98.052 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.255 |
99.351 |
0.37 |
| pilA2 | Legionella pneumophila str. Paris |
38 |
97.403 |
0.37 |
| pilA | Vibrio cholerae strain A1552 |
36.774 |
100 |
0.37 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.774 |
100 |
0.37 |
| pilA | Vibrio cholerae C6706 |
36.774 |
100 |
0.37 |