Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LDP97_RS21555 Genome accession   NZ_CP084581
Coordinates   4702778..4704019 (-) Length   413 a.a.
NCBI ID   WP_252211937.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain Ah27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4697778..4709019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDP97_RS21525 (LDP97_21525) - 4698618..4699802 (+) 1185 WP_016352174.1 tetratricopeptide repeat protein -
  LDP97_RS21530 (LDP97_21530) mutT 4699811..4700224 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  LDP97_RS21535 (LDP97_21535) yacG 4700285..4700479 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  LDP97_RS21540 (LDP97_21540) zapD 4700489..4701211 (-) 723 WP_016352172.1 cell division protein ZapD -
  LDP97_RS21545 (LDP97_21545) coaE 4701249..4701863 (-) 615 WP_016352171.1 dephospho-CoA kinase -
  LDP97_RS21550 (LDP97_21550) pilD 4701883..4702755 (-) 873 WP_016352170.1 A24 family peptidase Machinery gene
  LDP97_RS21555 (LDP97_21555) pilC 4702778..4704019 (-) 1242 WP_252211937.1 type II secretion system F family protein Machinery gene
  LDP97_RS21560 (LDP97_21560) pilB 4704135..4705841 (-) 1707 WP_016352168.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  LDP97_RS21565 (LDP97_21565) tapA 4705848..4706270 (-) 423 WP_016352167.1 type IVa pilus major pilin TapA -
  LDP97_RS21570 (LDP97_21570) nadC 4706593..4707450 (-) 858 WP_016352165.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LDP97_RS21575 (LDP97_21575) - 4707456..4707926 (-) 471 WP_024944772.1 retropepsin-like aspartic protease -
  LDP97_RS21580 (LDP97_21580) ampD 4708074..4708646 (+) 573 WP_016352163.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45440.57 Da        Isoelectric Point: 9.8734

>NTDB_id=611909 LDP97_RS21555 WP_252211937.1 4702778..4704019(-) (pilC) [Aeromonas hydrophila strain Ah27]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMEIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=611909 LDP97_RS21555 WP_252211937.1 4702778..4704019(-) (pilC) [Aeromonas hydrophila strain Ah27]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGAAATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACGCCTATGTCCGAGGCACTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAGTCCGGCGCTCTGGAGACCATCTACGACCGCATC
GCCACCTATCGCGAAAAGTCCGAAGCCCTCAAATCCAAAATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCGCTTTTACCCAGTTCGTCATCGGTATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTTCTCTATGTGCGCGCCTGGCGCGCCTCACAGAAAGTCAGAGACAACACCGACAAGTTCATACTAACCAT
CCCCGTGGTTGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGTACCCTCTCCACTACCTTCTCCGCCGGTA
TTCCACTGGTGGATGCCTTGGTCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCAGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGAGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCT
ATGTATCTACCCATCTTCAAACTGGGGTCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

47.103

96.126

0.453
  pilG Neisseria meningitidis 44/76-A

40.247

98.063

0.395
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilC Thermus thermophilus HB27

37.75

96.852

0.366