NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	LDP97_RS21550	Genome accession	NZ_CP084581
Coordinates	4701883..4702755 (-)	Length	290 a.a.
NCBI ID	WP_016352170.1	Uniprot ID	-
Organism	Aeromonas hydrophila strain Ah27
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4696883..4707755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDP97_RS21525 (LDP97_21525)	-	4698618..4699802 (+)	1185	WP_016352174.1	tetratricopeptide repeat protein	-
LDP97_RS21530 (LDP97_21530)	mutT	4699811..4700224 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
LDP97_RS21535 (LDP97_21535)	yacG	4700285..4700479 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
LDP97_RS21540 (LDP97_21540)	zapD	4700489..4701211 (-)	723	WP_016352172.1	cell division protein ZapD	-
LDP97_RS21545 (LDP97_21545)	coaE	4701249..4701863 (-)	615	WP_016352171.1	dephospho-CoA kinase	-
LDP97_RS21550 (LDP97_21550)	pilD	4701883..4702755 (-)	873	WP_016352170.1	A24 family peptidase	Machinery gene
LDP97_RS21555 (LDP97_21555)	pilC	4702778..4704019 (-)	1242	WP_252211937.1	type II secretion system F family protein	Machinery gene
LDP97_RS21560 (LDP97_21560)	pilB	4704135..4705841 (-)	1707	WP_016352168.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
LDP97_RS21565 (LDP97_21565)	tapA	4705848..4706270 (-)	423	WP_016352167.1	type IVa pilus major pilin TapA	-
LDP97_RS21570 (LDP97_21570)	nadC	4706593..4707450 (-)	858	WP_016352165.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32464.76 Da Isoelectric Point: 6.7410

                                >NTDB_id=611908 LDP97_RS21550 WP_016352170.1 4701883..4702755(-) (pilD) [Aeromonas hydrophila strain Ah27]

MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA

ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVTATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLATFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=611908 LDP97_RS21550 WP_016352170.1 4701883..4702755(-) (pilD) [Aeromonas hydrophila strain Ah27]

ATGTTGCTGATCACTGACGTTTTTCACAGCTTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG

CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA

ATCCAGAGACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCTCATTGCGGCCACGCA

ATTACGGCCATAGAGAACATCCCCCTACTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC

GGCCCGTTATCCTCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCACCGCAACATTCGCACCGGGCTGGGGCT

TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG

CTGACCCTGCCATTGCTATGGGGCGGTCTGCTGTTCAATTTGGCTGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG

TGCGATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGCTGTTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG

GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT

GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCGCGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	54.035	98.276	0.531
pilD	Acinetobacter nosocomialis M2	54.035	98.276	0.531
pilD	Neisseria gonorrhoeae MS11	48.872	91.724	0.448

Detailed information NTG0611908