Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NOV99_RS08105 Genome accession   NZ_CP101844
Coordinates   1638192..1638995 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain 2018WUSS151     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633192..1643995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV99_RS08090 (NOV99_08090) pbp2b 1633393..1635468 (-) 2076 WP_002935847.1 penicillin-binding protein PBP2B -
  NOV99_RS08095 (NOV99_08095) - 1635560..1636015 (-) 456 WP_002935846.1 ATP-binding cassette domain-containing protein -
  NOV99_RS08100 (NOV99_08100) - 1636254..1637456 (+) 1203 WP_172057981.1 IS110 family transposase -
  NOV99_RS08105 (NOV99_08105) vicX 1638192..1638995 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  NOV99_RS08110 (NOV99_08110) micB 1639002..1640351 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NOV99_RS08115 (NOV99_08115) yycF 1640344..1641048 (-) 705 WP_002935840.1 response regulator YycF -
  NOV99_RS08120 (NOV99_08120) - 1641242..1642003 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  NOV99_RS08125 (NOV99_08125) - 1642014..1642853 (+) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  NOV99_RS08130 (NOV99_08130) - 1642868..1643566 (+) 699 WP_002935835.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=611908 NOV99_RS08105 WP_002935843.1 1638192..1638995(-) (vicX) [Streptococcus suis strain 2018WUSS151]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=611908 NOV99_RS08105 WP_002935843.1 1638192..1638995(-) (vicX) [Streptococcus suis strain 2018WUSS151]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGTCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772