Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LA387_RS06705 | Genome accession | NZ_CP084377 |
| Coordinates | 1311331..1311720 (-) | Length | 129 a.a. |
| NCBI ID | WP_003133885.1 | Uniprot ID | - |
| Organism | Lactococcus garvieae strain Lg-Granada | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1304878..1311720 | 1311331..1311720 | within | 0 |
Gene organization within MGE regions
Location: 1304878..1311720
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA387_RS06670 | tmk | 1304878..1305507 (-) | 630 | WP_003133897.1 | dTMP kinase | - |
| LA387_RS06675 | yycF | 1305718..1306419 (+) | 702 | WP_003133894.1 | response regulator YycF | - |
| LA387_RS06680 | - | 1306412..1307830 (+) | 1419 | WP_003133893.1 | ATP-binding protein | - |
| LA387_RS06685 | - | 1307827..1308639 (+) | 813 | WP_003133892.1 | MBL fold metallo-hydrolase | - |
| LA387_RS06690 | groL | 1308691..1310316 (-) | 1626 | WP_003133890.1 | chaperonin GroEL | - |
| LA387_RS06695 | groES | 1310345..1310626 (-) | 282 | WP_225666483.1 | co-chaperone GroES | - |
| LA387_RS06700 | - | 1310743..1311273 (-) | 531 | WP_003133887.1 | ClbS/DfsB family four-helix bundle protein | - |
| LA387_RS06705 | ssbB | 1311331..1311720 (-) | 390 | WP_003133885.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14760.93 Da Isoelectric Point: 9.3830
>NTDB_id=610854 LA387_RS06705 WP_003133885.1 1311331..1311720(-) (ssbB) [Lactococcus garvieae strain Lg-Granada]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIENSTLNLKEDELPF
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIENSTLNLKEDELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=610854 LA387_RS06705 WP_003133885.1 1311331..1311720(-) (ssbB) [Lactococcus garvieae strain Lg-Granada]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAGAGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCATTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAATAGTACGCTTAATTTAAAAGAAGACGAATTACCATTTTAA
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAGAGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCATTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAATAGTACGCTTAATTTAAAAGAAGACGAATTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
56.589 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.769 |
100 |
0.512 |
| ssbA | Streptococcus mutans UA159 |
50 |
100 |
0.504 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50 |
100 |
0.504 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
42.857 |
86.822 |
0.372 |