Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LDO52_RS01400 Genome accession   NZ_CP084300
Coordinates   302125..304257 (+) Length   710 a.a.
NCBI ID   WP_410553172.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297125..309257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS01380 (LDO52_01380) pilM 299130..300188 (+) 1059 WP_005168888.1 pilus assembly protein PilM Machinery gene
  LDO52_RS01385 (LDO52_01385) comN 300188..300826 (+) 639 WP_005094324.1 PilN domain-containing protein Machinery gene
  LDO52_RS01390 (LDO52_01390) comO 300823..301536 (+) 714 WP_005094323.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO52_RS01395 (LDO52_01395) pilP 301536..302063 (+) 528 WP_005094322.1 pilus assembly protein PilP Machinery gene
  LDO52_RS01400 (LDO52_01400) pilQ 302125..304257 (+) 2133 WP_410553172.1 type IV pilus secretin PilQ Machinery gene
  LDO52_RS01405 (LDO52_01405) aroK 304294..304830 (+) 537 WP_005094320.1 shikimate kinase AroK -
  LDO52_RS01410 (LDO52_01410) aroB 304859..305938 (+) 1080 WP_100329400.1 3-dehydroquinate synthase -
  LDO52_RS01415 (LDO52_01415) - 305951..306823 (+) 873 WP_159138839.1 hypothetical protein -
  LDO52_RS01420 (LDO52_01420) - 306901..307652 (+) 752 WP_373683608.1 IS5 family transposase -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77446.65 Da        Isoelectric Point: 4.8540

>NTDB_id=610508 LDO52_RS01400 WP_410553172.1 302125..304257(+) (pilQ) [Acinetobacter pseudolwoffii strain XMC5X702]
MNRVFRQFSMGAVAIAVMQAASAQVAVINIVAMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFDQAQQNLKQSNI
PVATREASSVDVTSDAQRARLTVNLADAGAFTTRVEGNTFILKINSATPVATAQPVLQQSAQGISNISFQRGAQGEGQVV
IDLAGNNTPVDVQQQGTKIIVRTLGTKIPTHLTRRLNVNDFATPVSSVDAVNQNGSGMITIQSGESYEYMAYQTDNKLTI
SLKRPEAKSPLRPKTVAYSGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNLD
KRRNGNVIWIAPVTELIKAEEEEAKALKQSVALAPIQTEYMQLSYAKAADIEKLITQNKSAQNSNNSSNNSSNTTNNEDK
ESLLSSRGSVSIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARVVRASTEFAKEMGVKWGILSQGITNNNSLL
VGGSDTTLWDLRTPEIDSATGIPTYEIQRPDNLNVDLGVENAAGRIAFGLISLSDFMLDLELSALQADGYGEVVSTPKVL
TADKQKATVESGLEVPYQSTEGSGANATATTEFKDVVLKLDVTPSITPDGKVQMELDISSDSIAGVTPMGEYYLNKNRLN
TNVLVENGETVVLGGIFEQETLNQQTKVPFLGDIPYVGRLFRKDLKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=610508 LDO52_RS01400 WP_410553172.1 302125..304257(+) (pilQ) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGAATCGTGTGTTTCGTCAGTTTTCAATGGGTGCTGTTGCGATTGCGGTGATGCAAGCAGCTAGCGCGCAGGTAGCCGT
GATCAATATCGTAGCTATGCAGCTTCCTGGACAAGGAACTGAAATTCGGGTGATGTTCAATGGTTTGCCACCACAGCCAC
AAGCCTATCAATTAGAATCACCTTCACGTCTAATTTTAGATTTTGACCAGGCCCAACAAAACTTAAAACAAAGCAATATT
CCGGTGGCAACACGTGAAGCCAGTTCGGTCGATGTGACTTCGGATGCACAACGTGCCCGTTTGACTGTTAATCTGGCAGA
TGCTGGTGCCTTTACCACGCGAGTTGAAGGGAATACCTTTATCCTGAAAATCAATTCAGCCACACCAGTCGCGACAGCTC
AACCGGTATTACAGCAGTCAGCTCAGGGAATTAGCAATATCAGTTTCCAGCGTGGGGCTCAAGGTGAAGGTCAGGTGGTG
ATTGACCTGGCAGGCAACAACACCCCGGTTGATGTACAGCAGCAGGGAACTAAAATCATTGTTCGAACCTTAGGCACGAA
GATCCCGACGCATTTGACCCGTCGTCTGAATGTGAATGATTTTGCGACGCCTGTGTCGAGTGTGGATGCAGTGAATCAAA
ATGGATCAGGCATGATTACGATCCAGTCCGGGGAAAGCTATGAATATATGGCTTATCAAACGGATAATAAGCTGACCATC
AGTTTGAAACGTCCGGAAGCCAAGAGTCCGCTACGTCCGAAGACCGTGGCTTATAGCGGCAAGAAAATTTCACTCGATTT
CCAGGATATTGAAGTACGTCGTGTACTACAGCTTTTGGCTGATTTTACCGATATCAATATGGTGGCAGCAGATAGTGTAC
AAGGCAATATTACCTTGCGCCTAAAAGAAGTGCCTTGGGATCAGGCACTGGATATTGTACTGAAAACCAAAAACCTGGAT
AAACGCCGTAATGGTAATGTGATCTGGATTGCACCAGTGACAGAACTGATTAAGGCAGAAGAGGAAGAGGCAAAAGCCTT
GAAGCAGAGCGTTGCACTTGCCCCTATTCAGACTGAATATATGCAGCTGAGTTATGCTAAAGCAGCGGATATTGAAAAGC
TGATTACCCAGAATAAATCTGCACAAAATTCAAATAACTCATCAAATAATTCTTCTAATACGACCAATAATGAAGATAAA
GAAAGCTTGTTAAGCTCACGTGGTTCAGTGTCTATCGATGCCCGTACCAATACGCTGATTGTAAATGATACCCAGCCTTT
TATCGATAAAATTCGTAATATGGTGGATCTGCTTGATGTACAGGTCAAGCAAGTAATGGTTGAAGCACGTGTAGTGCGAG
CATCTACTGAGTTTGCCAAAGAAATGGGGGTGAAGTGGGGGATTCTGTCACAAGGAATTACCAACAATAATAGCCTTCTG
GTCGGTGGTAGCGATACAACATTATGGGATTTAAGAACGCCTGAGATTGATAGTGCTACAGGAATTCCAACTTATGAAAT
TCAGCGTCCAGATAACCTGAATGTTGATTTGGGAGTGGAAAATGCAGCTGGTCGTATTGCCTTTGGTTTAATCAGTCTCT
CTGATTTTATGCTGGATCTGGAACTGTCTGCATTGCAGGCAGATGGTTATGGTGAAGTTGTTTCTACGCCAAAAGTTCTG
ACCGCAGATAAACAAAAAGCGACTGTTGAATCTGGTTTAGAAGTACCATATCAATCTACAGAAGGGAGTGGAGCAAATGC
TACAGCGACTACTGAGTTTAAAGATGTTGTATTGAAGCTTGATGTGACGCCAAGCATCACGCCTGATGGTAAAGTGCAAA
TGGAATTAGATATTTCTAGTGATAGTATCGCTGGGGTAACCCCAATGGGAGAATATTACTTAAATAAAAACCGTTTGAAT
ACTAATGTCTTGGTTGAAAATGGTGAAACGGTTGTCTTGGGTGGTATTTTTGAACAAGAAACTTTGAACCAACAGACTAA
AGTTCCATTCTTAGGCGATATTCCTTATGTAGGGCGTTTATTCCGTAAAGATTTAAAATCGGATAACAAGCGTGAGTTAC
TGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-444)

AMIN domain (AMIN)

(40-120)

Bacterial type II and III secretion system protein (Secretin)

(544-702)

Secretin and TonB N terminus short domain (STN)

(290-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.274

100

0.756
  pilQ Acinetobacter baumannii strain A118

74.136

100

0.755
  comQ Acinetobacter baylyi ADP1

69.874

100

0.706
  pilQ Pseudomonas aeruginosa PAK

40.082

100

0.413
  pilQ Legionella pneumophila strain Lp02

36.045

100

0.362