Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LDO52_RS01390 Genome accession   NZ_CP084300
Coordinates   300823..301536 (+) Length   237 a.a.
NCBI ID   WP_005094323.1    Uniprot ID   A0A2H9YR71
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295823..306536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS01375 (LDO52_01375) ponA 296436..298964 (-) 2529 WP_225553564.1 penicillin-binding protein PBP1a -
  LDO52_RS01380 (LDO52_01380) pilM 299130..300188 (+) 1059 WP_005168888.1 pilus assembly protein PilM Machinery gene
  LDO52_RS01385 (LDO52_01385) comN 300188..300826 (+) 639 WP_005094324.1 PilN domain-containing protein Machinery gene
  LDO52_RS01390 (LDO52_01390) comO 300823..301536 (+) 714 WP_005094323.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO52_RS01395 (LDO52_01395) pilP 301536..302063 (+) 528 WP_005094322.1 pilus assembly protein PilP Machinery gene
  LDO52_RS01400 (LDO52_01400) pilQ 302125..304257 (+) 2133 WP_410553172.1 type IV pilus secretin PilQ Machinery gene
  LDO52_RS01405 (LDO52_01405) aroK 304294..304830 (+) 537 WP_005094320.1 shikimate kinase AroK -
  LDO52_RS01410 (LDO52_01410) aroB 304859..305938 (+) 1080 WP_100329400.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26928.51 Da        Isoelectric Point: 4.7604

>NTDB_id=610506 LDO52_RS01390 WP_005094323.1 300823..301536(+) (comO) [Acinetobacter pseudolwoffii strain XMC5X702]
MSNEKFDEFSQDAVAVPKNKMTVEKFFQQFNTLDPNNYGSWPLSVKISCWIFIVILVFMLIYFALTRSTIESISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNAEASSAGTSTTQGAQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=610506 LDO52_RS01390 WP_005094323.1 300823..301536(+) (comO) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGAGTAATGAAAAATTCGATGAGTTCAGCCAGGATGCCGTGGCTGTACCTAAAAATAAAATGACAGTTGAGAAATTTTT
TCAGCAATTCAATACCCTAGATCCTAATAATTATGGCAGCTGGCCTTTATCGGTCAAGATTAGCTGCTGGATTTTTATTG
TTATCTTGGTATTTATGCTGATTTATTTTGCTCTGACCAGAAGTACGATTGAATCGATTTCACAAGCCAGTGCCCAGGAA
CAAAACCTGCTGAATGAGTTTCGTGAAAAGGAATCAAAATTACGTAATCTACAACAATATCAGATTCAGCTTCAGGAAAT
GGAAGCACGTTTTAACCAGCAATTAGAACAATTGCCGAAGGAAACTGAAATTCCGGGTCTGGTTGAGGATATTAACCTGA
GCGGTGTCAATTCAGGTCTGAAGTTTAAAAATATCCGTCTGGAACCTGAAATTAAGCAAGAGTTCTTTATTGAACAGCCA
ATTGCGATTGAAGCGACTGGGGATTATCACGCTTTTGGTTCTTTTGTCAGCAGTATTGCAGGCTTGTCGCGTATTGTTAC
CTTGCATGATTTCACCATCACCGGTACTGAGAATAAAGAGAAAAAGTCTGAGATTCCGGTGATTGATTATGTGGTTAAGG
CCAAAACCTATCGTTATGTGGGCAATGCCGAGGCTTCTTCAGCAGGTACGAGCACTACTCAGGGGGCGCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H9YR71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.355

100

0.688
  pilO Acinetobacter baumannii D1279779

66.529

100

0.679