Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LDO52_RS01385 Genome accession   NZ_CP084300
Coordinates   300188..300826 (+) Length   212 a.a.
NCBI ID   WP_005094324.1    Uniprot ID   N9MCI1
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295188..305826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS01370 (LDO52_01370) - 295569..296372 (+) 804 WP_005094332.1 putative RNA methyltransferase -
  LDO52_RS01375 (LDO52_01375) ponA 296436..298964 (-) 2529 WP_225553564.1 penicillin-binding protein PBP1a -
  LDO52_RS01380 (LDO52_01380) pilM 299130..300188 (+) 1059 WP_005168888.1 pilus assembly protein PilM Machinery gene
  LDO52_RS01385 (LDO52_01385) comN 300188..300826 (+) 639 WP_005094324.1 PilN domain-containing protein Machinery gene
  LDO52_RS01390 (LDO52_01390) comO 300823..301536 (+) 714 WP_005094323.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO52_RS01395 (LDO52_01395) pilP 301536..302063 (+) 528 WP_005094322.1 pilus assembly protein PilP Machinery gene
  LDO52_RS01400 (LDO52_01400) pilQ 302125..304257 (+) 2133 WP_410553172.1 type IV pilus secretin PilQ Machinery gene
  LDO52_RS01405 (LDO52_01405) aroK 304294..304830 (+) 537 WP_005094320.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23869.01 Da        Isoelectric Point: 4.8090

>NTDB_id=610505 LDO52_RS01385 WP_005094324.1 300188..300826(+) (comN) [Acinetobacter pseudolwoffii strain XMC5X702]
MAKINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPANMYITKFQRTGDKFSIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEESKEKAPSSIIPRVEESYGSFTVTVDLDQIAEPVLNEEQQAANTTPGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=610505 LDO52_RS01385 WP_005094324.1 300188..300826(+) (comN) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGGCAAAGATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTCGTGGCAATCTGTGTGGG
GGCGCTTTTCTTAGGACTGGCGGCGGCAGGTTCAACCTGGTTTTATTATGATCACAAGCTTCAGGATCAGGAACAGGCCA
ATCAGCTGATTCAAAGTACCAACCAGAATCTGGATGTGCAGTTAAAAGCGCTAGAAGGTTTGCAAGAGCAACGTAATGCC
ATTGTTGAGCGGATGAAGCTGATTCAGGGCTTGCAAACGCAACGTCCGATCGCGGTGCATTTGATTGATGAAATTGTGCG
GGTGACACCAGCCAATATGTACATCACCAAGTTTCAGCGTACTGGCGATAAATTTAGCATCGAAGGTCGAGCCGAGAGTC
CAAATACCGTAGCAGAATTACTGCGTAATCTGGAAGCTTCCTCCTGGTACCGAAACGCCTTTATGAATGCCTTCCTGGTG
GCTGAAGAATCCAAAGAAAAGGCACCGAGCTCGATTATTCCACGTGTTGAAGAGTCTTATGGCAGCTTTACCGTGACTGT
GGATCTGGATCAGATCGCTGAACCGGTACTGAATGAAGAACAGCAAGCAGCCAATACCACTCCGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

66.986

98.585

0.66
  pilN Acinetobacter baumannii D1279779

70.466

91.038

0.642