Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LDO52_RS01395 Genome accession   NZ_CP084300
Coordinates   301536..302063 (+) Length   175 a.a.
NCBI ID   WP_005094322.1    Uniprot ID   N9MDH9
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296536..307063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS01380 (LDO52_01380) pilM 299130..300188 (+) 1059 WP_005168888.1 pilus assembly protein PilM Machinery gene
  LDO52_RS01385 (LDO52_01385) comN 300188..300826 (+) 639 WP_005094324.1 PilN domain-containing protein Machinery gene
  LDO52_RS01390 (LDO52_01390) comO 300823..301536 (+) 714 WP_005094323.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO52_RS01395 (LDO52_01395) pilP 301536..302063 (+) 528 WP_005094322.1 pilus assembly protein PilP Machinery gene
  LDO52_RS01400 (LDO52_01400) pilQ 302125..304257 (+) 2133 WP_410553172.1 type IV pilus secretin PilQ Machinery gene
  LDO52_RS01405 (LDO52_01405) aroK 304294..304830 (+) 537 WP_005094320.1 shikimate kinase AroK -
  LDO52_RS01410 (LDO52_01410) aroB 304859..305938 (+) 1080 WP_100329400.1 3-dehydroquinate synthase -
  LDO52_RS01415 (LDO52_01415) - 305951..306823 (+) 873 WP_159138839.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19268.39 Da        Isoelectric Point: 7.1659

>NTDB_id=610507 LDO52_RS01395 WP_005094322.1 301536..302063(+) (pilP) [Acinetobacter pseudolwoffii strain XMC5X702]
MNRIKITSVLALGLVLLGCDSRIDAVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVSGITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=610507 LDO52_RS01395 WP_005094322.1 301536..302063(+) (pilP) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGAATAGGATTAAAATTACTTCAGTTTTAGCGCTTGGACTGGTATTGCTAGGATGTGATTCACGTATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAACCAGCCACCTTTGCCGATTGAACCTGCACCCGATTTTATGCCAGTTGAAACCTTCA
ACTATGCAGCACATCAGATCAAAAGTCCTTTTCTACCGAGTTCTCTGGCTGCCGAGCTAAAGATTATGGCGGGGAAACGG
GTTTATCCAAATTTATCACGTCAATTGCAACCACTGGAAAGTTATCCTCTGGAAACCTTGAGCATGAAAGGCAGCATGCG
TAATCAGGCCGGACAGATTCTGGCTTTAATCCAGACACCGGACGGTGAGATTGAACGGATACAGCGTGGTAGCTATATGG
GGCTTAATCATGGTCGTGTGAGTGGTATTACACCAACGCAGATCGATTTGATTGAGATTATTCCAGATGGCCGTGAAGGA
TATGTGGAGCGTCCGCGAAGTCTGGTTCTGATTGGGCCGGCACCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MDH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

78.363

97.714

0.766
  comL Acinetobacter baylyi ADP1

72.674

98.286

0.714