Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   I6G24_RS07995 Genome accession   NZ_CP084189
Coordinates   1539902..1540291 (-) Length   129 a.a.
NCBI ID   WP_023163755.1    Uniprot ID   A0AAQ0U0J8
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1534902..1545291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS07975 (I6G24_07980) - 1535311..1536753 (+) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK -
  I6G24_RS07980 (I6G24_07985) - 1536924..1537736 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  I6G24_RS07985 (I6G24_07990) groL 1537782..1539410 (-) 1629 WP_003131585.1 chaperonin GroEL -
  I6G24_RS07990 (I6G24_07995) groES 1539498..1539782 (-) 285 WP_143459892.1 co-chaperone GroES -
  I6G24_RS07995 (I6G24_08000) ssbB 1539902..1540291 (-) 390 WP_023163755.1 single-stranded DNA-binding protein Machinery gene
  I6G24_RS08000 (I6G24_08005) nox 1540381..1541721 (-) 1341 WP_023163754.1 H2O-forming NADH oxidase -
  I6G24_RS08005 (I6G24_08010) ytpR 1541884..1542510 (-) 627 WP_023163753.1 YtpR family tRNA-binding protein -
  I6G24_RS08010 (I6G24_08015) - 1542596..1542913 (-) 318 WP_003131595.1 thioredoxin family protein -
  I6G24_RS08015 (I6G24_08020) - 1542955..1543239 (-) 285 WP_003131596.1 hypothetical protein -
  I6G24_RS08020 (I6G24_08025) pepA 1543342..1544409 (+) 1068 WP_023163752.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14662.70 Da        Isoelectric Point: 8.3705

>NTDB_id=609945 I6G24_RS07995 WP_023163755.1 1539902..1540291(-) (ssbB) [Lactococcus lactis strain FDAARGOS_867]
MNKTMLIGRLTSASEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=609945 I6G24_RS07995 WP_023163755.1 1539902..1540291(-) (ssbB) [Lactococcus lactis strain FDAARGOS_867]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGTCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38