Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   I6G24_RS07995 Genome accession   NZ_CP084189
Coordinates   1539902..1540291 (-) Length   129 a.a.
NCBI ID   WP_023163755.1    Uniprot ID   A0AAQ0U0J8
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1519735..1540291 1539902..1540291 within 0


Gene organization within MGE regions


Location: 1519735..1540291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS07850 (I6G24_07855) - 1519735..1520934 (-) 1200 WP_047686426.1 site-specific integrase -
  I6G24_RS07855 (I6G24_07860) - 1520986..1521450 (-) 465 WP_052133374.1 helix-turn-helix domain-containing protein -
  I6G24_RS07860 (I6G24_07865) - 1521579..1521770 (+) 192 WP_047686432.1 helix-turn-helix domain-containing protein -
  I6G24_RS07865 (I6G24_07870) - 1521922..1522116 (+) 195 WP_047686436.1 DUF1655 domain-containing protein -
  I6G24_RS07870 (I6G24_07875) - 1522120..1522728 (+) 609 WP_143459884.1 hypothetical protein -
  I6G24_RS07875 (I6G24_07880) - 1522725..1522994 (+) 270 WP_047687091.1 hypothetical protein -
  I6G24_RS07880 (I6G24_07885) - 1523004..1523255 (+) 252 WP_047687089.1 hypothetical protein -
  I6G24_RS07885 (I6G24_07890) - 1523252..1523446 (+) 195 WP_047687087.1 hypothetical protein -
  I6G24_RS07890 (I6G24_07895) - 1523433..1523762 (+) 330 WP_047687085.1 hypothetical protein -
  I6G24_RS07895 (I6G24_07900) - 1523871..1525538 (+) 1668 WP_047687083.1 hypothetical protein -
  I6G24_RS07900 (I6G24_07905) - 1525918..1526319 (+) 402 WP_047687082.1 hypothetical protein -
  I6G24_RS07905 (I6G24_07910) - 1526321..1526461 (+) 141 WP_160257225.1 hypothetical protein -
  I6G24_RS07910 (I6G24_07915) - 1526582..1527085 (+) 504 WP_047206638.1 hypothetical protein -
  I6G24_RS07915 (I6G24_07920) - 1527075..1527404 (+) 330 WP_047206637.1 sigma-70 family RNA polymerase sigma factor -
  I6G24_RS07920 (I6G24_07925) - 1527407..1528108 (+) 702 WP_047206636.1 hypothetical protein -
  I6G24_RS07925 (I6G24_07930) - 1528180..1528596 (+) 417 WP_047687076.1 RinA family protein -
  I6G24_RS07930 (I6G24_07935) - 1529029..1529823 (+) 795 WP_047687074.1 toll/interleukin-1 receptor domain-containing protein -
  I6G24_RS07935 (I6G24_07940) - 1529840..1530244 (+) 405 WP_143459883.1 hypothetical protein -
  I6G24_RS07940 (I6G24_07945) - 1530515..1530706 (+) 192 WP_003131566.1 hypothetical protein -
  I6G24_RS07945 (I6G24_07950) rsmI 1530783..1531658 (-) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  I6G24_RS07950 (I6G24_07955) yabA 1531658..1531984 (-) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  I6G24_RS07955 (I6G24_07960) ricT 1531977..1532759 (-) 783 WP_010905316.1 stage 0 sporulation family protein -
  I6G24_RS07960 (I6G24_07965) - 1532811..1533671 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  I6G24_RS07965 (I6G24_07970) tmk 1533804..1534439 (-) 636 WP_012897230.1 dTMP kinase -
  I6G24_RS07970 (I6G24_07975) yycF 1534617..1535318 (+) 702 WP_003131580.1 response regulator YycF -
  I6G24_RS07975 (I6G24_07980) - 1535311..1536753 (+) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK -
  I6G24_RS07980 (I6G24_07985) - 1536924..1537736 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  I6G24_RS07985 (I6G24_07990) groL 1537782..1539410 (-) 1629 WP_003131585.1 chaperonin GroEL -
  I6G24_RS07990 (I6G24_07995) groES 1539498..1539782 (-) 285 WP_143459892.1 co-chaperone GroES -
  I6G24_RS07995 (I6G24_08000) ssbB 1539902..1540291 (-) 390 WP_023163755.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14662.70 Da        Isoelectric Point: 8.3705

>NTDB_id=609945 I6G24_RS07995 WP_023163755.1 1539902..1540291(-) (ssbB) [Lactococcus lactis strain FDAARGOS_867]
MNKTMLIGRLTSASEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=609945 I6G24_RS07995 WP_023163755.1 1539902..1540291(-) (ssbB) [Lactococcus lactis strain FDAARGOS_867]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGTCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38