NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	M6G08_RS03975	Genome accession	NZ_CP101137
Coordinates	883825..884430 (-)	Length	201 a.a.
NCBI ID	WP_051005918.1	Uniprot ID	A0ABW8BH27
Organism	Streptomyces sp. M92
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 878825..889430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M6G08_RS03960 (M6G08_03970)	-	880549..881514 (+)	966	WP_272585797.1	hypothetical protein	-
M6G08_RS03965 (M6G08_03975)	clpX	881583..882869 (-)	1287	WP_073723047.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
M6G08_RS03970 (M6G08_03980)	clpP	883061..883741 (-)	681	WP_272585798.1	ATP-dependent Clp protease proteolytic subunit	Regulator
M6G08_RS03975 (M6G08_03985)	clpP	883825..884430 (-)	606	WP_051005918.1	ATP-dependent Clp protease proteolytic subunit	Regulator
M6G08_RS03980 (M6G08_03990)	tig	884765..886171 (-)	1407	WP_272585799.1	trigger factor	-
M6G08_RS03995 (M6G08_04005)	-	887395..887841 (+)	447	WP_272585800.1	SANT/Myb-like DNA-binding domain-containing protein	-
M6G08_RS04000 (M6G08_04010)	-	887906..888277 (+)	372	WP_272585801.1	hypothetical protein	-
M6G08_RS04005 (M6G08_04015)	-	888534..888728 (-)	195	WP_029393243.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21226.13 Da Isoelectric Point: 4.6747

                                >NTDB_id=608983 M6G08_RS03975 WP_051005918.1 883825..884430(-) (clpP) [Streptomyces sp. M92]

MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQF

IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE

QITRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide

Download Length: 606 bp

                                >NTDB_id=608983 M6G08_RS03975 WP_051005918.1 883825..884430(-) (clpP) [Streptomyces sp. M92]

ATGCCCTCCGCCGCCGGCGAGCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT

CATCTTCCTCGGCCAGCCGGTCGACGACGACATTGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGACCCGG

ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCGGGCATGGCGATCTACGACACCATGCAGTTC

ATCAAGAACGACGTGGTGACGATCGCCATGGGTCTCGCGGCCTCCATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCGGG

CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTGGCCGGCTCGGCCTCGGACATCA

AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCGCAGCACACCGGCCAGACGGTCGAG

CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT

CCCCACGGCCGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	59.064	85.075	0.502
clpP	Lactococcus lactis subsp. cremoris KW2	53.261	91.542	0.488
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.973	92.04	0.488
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.717	91.542	0.483
clpP	Streptococcus mutans UA159	55.491	86.07	0.478
clpP	Streptococcus pyogenes MGAS315	52.601	86.07	0.453
clpP	Streptococcus pyogenes JRS4	52.601	86.07	0.453
clpP	Streptococcus thermophilus LMG 18311	51.445	86.07	0.443
clpP	Streptococcus thermophilus LMD-9	51.445	86.07	0.443
clpP	Streptococcus pneumoniae Rx1	50.867	86.07	0.438
clpP	Streptococcus pneumoniae D39	50.867	86.07	0.438
clpP	Streptococcus pneumoniae R6	50.867	86.07	0.438
clpP	Streptococcus pneumoniae TIGR4	50.867	86.07	0.438

Detailed information NTG0608983