Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   M6G08_RS03970 Genome accession   NZ_CP101137
Coordinates   883061..883741 (-) Length   226 a.a.
NCBI ID   WP_272585798.1    Uniprot ID   -
Organism   Streptomyces sp. M92     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 878061..888741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G08_RS03960 (M6G08_03970) - 880549..881514 (+) 966 WP_272585797.1 hypothetical protein -
  M6G08_RS03965 (M6G08_03975) clpX 881583..882869 (-) 1287 WP_073723047.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  M6G08_RS03970 (M6G08_03980) clpP 883061..883741 (-) 681 WP_272585798.1 ATP-dependent Clp protease proteolytic subunit Regulator
  M6G08_RS03975 (M6G08_03985) clpP 883825..884430 (-) 606 WP_051005918.1 ATP-dependent Clp protease proteolytic subunit Regulator
  M6G08_RS03980 (M6G08_03990) tig 884765..886171 (-) 1407 WP_272585799.1 trigger factor -
  M6G08_RS03995 (M6G08_04005) - 887395..887841 (+) 447 WP_272585800.1 SANT/Myb-like DNA-binding domain-containing protein -
  M6G08_RS04000 (M6G08_04010) - 887906..888277 (+) 372 WP_272585801.1 hypothetical protein -
  M6G08_RS04005 (M6G08_04015) - 888534..888728 (-) 195 WP_029393243.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25136.46 Da        Isoelectric Point: 4.5790

>NTDB_id=608982 M6G08_RS03970 WP_272585798.1 883061..883741(-) (clpP) [Streptomyces sp. M92]
MNDFPGSGLYDRTRAEYTGPSAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDSLSYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=608982 M6G08_RS03970 WP_272585798.1 883061..883741(-) (clpP) [Streptomyces sp. M92]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACGCGCGCCGAGTACACCGGCCCGAGCGCCGAGTCCCGCTACGT
GATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTA
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCCCGCATCCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCTCGCAGCTGGAGGAGATGCTGGCTAAGCACTCCACCACGCCGGT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACTCGCTGAGCTACGGCCTGATCGACCAGA
TCATCACCACCCGGAAGATGGACAACTCCTCTCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.071

0.429
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

43.902

90.708

0.398
  clpP Streptococcus pyogenes JRS4

44.279

88.938

0.394
  clpP Streptococcus pyogenes MGAS315

44.279

88.938

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.059

89.381

0.394
  clpP Streptococcus thermophilus LMG 18311

45.128

86.283

0.389
  clpP Streptococcus thermophilus LMD-9

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.069

89.381

0.385
  clpP Streptococcus pneumoniae Rx1

43.878

86.726

0.381
  clpP Streptococcus pneumoniae D39

43.878

86.726

0.381
  clpP Streptococcus pneumoniae R6

43.878

86.726

0.381
  clpP Streptococcus pneumoniae TIGR4

43.878

86.726

0.381