Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LCC91_RS09525 Genome accession   NZ_CP083911
Coordinates   2020805..2022022 (+) Length   405 a.a.
NCBI ID   WP_043703848.1    Uniprot ID   A0A554X393
Organism   Tepidimonas taiwanensis strain LMG 22826     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2015805..2027022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCC91_RS09505 (LCC91_09505) prmA 2016183..2017103 (-) 921 WP_052231818.1 50S ribosomal protein L11 methyltransferase -
  LCC91_RS09510 (LCC91_09510) accC 2017090..2018442 (-) 1353 WP_043703856.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  LCC91_RS09515 (LCC91_09515) accB 2018453..2018923 (-) 471 WP_043703854.1 acetyl-CoA carboxylase biotin carboxyl carrier protein -
  LCC91_RS09520 (LCC91_09520) pilB 2019033..2020760 (+) 1728 WP_043703851.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LCC91_RS09525 (LCC91_09525) pilC 2020805..2022022 (+) 1218 WP_043703848.1 type II secretion system F family protein Machinery gene
  LCC91_RS09530 (LCC91_09530) - 2022154..2023806 (+) 1653 WP_043703845.1 tetratricopeptide repeat protein -
  LCC91_RS09535 (LCC91_09535) - 2023813..2025450 (+) 1638 WP_058616336.1 response regulator -
  LCC91_RS09550 (LCC91_09550) - 2026319..2026996 (+) 678 WP_224440910.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44140.76 Da        Isoelectric Point: 9.4806

>NTDB_id=608469 LCC91_RS09525 WP_043703848.1 2020805..2022022(+) (pilC) [Tepidimonas taiwanensis strain LMG 22826]
MATATPSVKEYVFEWEGKDRNGKTVKGELRAVGEAQVQSQLRRQGITVQKVKKRRLSSAKRIKPKDIAIFTRQLATMMKA
GVPLLQAFDIVGRGNPNPSVTRLLYDIRTDIETGTSLSAAFRKHPLYFNSLYCNLVAAGEAAGILEDILDRLATYLEKTE
AIKSKVKSALMYPTAVLVVAFIVVSLIMIFVVPAFKDVFTSFGADLPAPTLAVIAMSEFFVAYWWLIFGGLGAGVYFFLQ
AWRRNEKVQRFMDRLLLRIPVFGPLVEKSAVARWTRTLSTMFAAGVPLVDALDTVGGAAGNSVYADATDKIQQEVASGTA
LTQAMTNTGVFPSMVLQMCAIGEESGALDHMLGKAADFYEQEVDDMVKGLSSLMEPIIIVVLGTIIGGIVVAMYLPIFKL
GAVVS

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=608469 LCC91_RS09525 WP_043703848.1 2020805..2022022(+) (pilC) [Tepidimonas taiwanensis strain LMG 22826]
ATGGCTACGGCAACACCCAGCGTCAAAGAATACGTTTTCGAGTGGGAAGGGAAAGACCGCAACGGCAAGACGGTCAAGGG
AGAATTGCGCGCAGTGGGCGAAGCCCAGGTACAGAGCCAGCTGCGTCGGCAGGGCATCACCGTACAAAAGGTGAAAAAGC
GCCGCTTGTCCTCCGCCAAGCGCATCAAGCCCAAAGACATTGCGATCTTTACGCGGCAGCTGGCCACTATGATGAAAGCG
GGGGTGCCGCTGCTGCAAGCGTTCGACATCGTCGGGCGTGGCAACCCCAACCCGAGCGTGACGCGGCTGCTCTACGACAT
CCGCACCGACATCGAGACCGGCACGTCGCTCAGCGCGGCGTTTCGCAAGCATCCGCTGTATTTCAACTCCCTTTACTGCA
ACCTCGTGGCCGCGGGGGAAGCAGCGGGTATTCTCGAGGACATCCTGGACCGGCTGGCCACCTACCTGGAAAAGACCGAG
GCGATCAAGAGCAAGGTCAAGTCCGCGCTGATGTACCCCACCGCGGTGCTGGTGGTGGCGTTCATCGTGGTGTCACTCAT
CATGATTTTCGTCGTGCCGGCGTTCAAGGATGTCTTCACCTCCTTCGGTGCCGACCTGCCGGCACCCACGCTGGCCGTCA
TCGCGATGAGCGAGTTTTTCGTCGCCTACTGGTGGCTGATCTTCGGCGGCTTGGGCGCAGGCGTGTACTTTTTCCTCCAG
GCGTGGAGGCGCAACGAGAAGGTGCAGCGCTTCATGGACCGGCTGCTGCTGCGCATCCCGGTATTCGGGCCGCTGGTCGA
GAAATCAGCGGTGGCGCGTTGGACCCGGACACTGTCGACGATGTTCGCCGCTGGGGTGCCGCTGGTAGACGCGCTCGACA
CGGTCGGTGGTGCCGCCGGCAACTCCGTCTACGCGGATGCCACCGACAAGATTCAGCAGGAGGTCGCAAGCGGCACGGCG
CTGACGCAGGCGATGACCAACACCGGCGTCTTTCCGTCGATGGTGCTGCAGATGTGTGCCATCGGCGAAGAGTCGGGCGC
GCTCGACCATATGCTGGGCAAGGCGGCCGACTTTTACGAGCAGGAGGTCGACGACATGGTCAAGGGCTTGTCGAGCCTGA
TGGAGCCCATCATCATCGTGGTGCTCGGCACGATCATTGGCGGCATCGTCGTCGCGATGTATCTGCCGATCTTCAAGTTG
GGGGCTGTGGTGTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A554X393

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.188

99.753

0.56
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

53.015

98.272

0.521
  pilG Neisseria meningitidis 44/76-A

52.764

98.272

0.519
  pilC Acinetobacter baylyi ADP1

50.251

98.272

0.494
  pilC Acinetobacter baumannii D1279779

49.118

98.025

0.481
  pilC Vibrio cholerae strain A1552

42.543

100

0.43
  pilC Vibrio campbellii strain DS40M4

41.119

100

0.417
  pilC Thermus thermophilus HB27

39.618

100

0.41