Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LA331_RS09315 Genome accession   NZ_CP083658
Coordinates   1876489..1877718 (+) Length   409 a.a.
NCBI ID   WP_004787210.1    Uniprot ID   N9P8Z0
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1871489..1882718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09270 (LA331_09270) rimP 1871846..1872370 (-) 525 WP_005233537.1 ribosome maturation factor RimP -
  LA331_RS09300 (LA331_09300) secG 1873335..1873664 (-) 330 WP_004787204.1 preprotein translocase subunit SecG -
  LA331_RS09305 (LA331_09305) tpiA 1873678..1874469 (-) 792 WP_005233535.1 triose-phosphate isomerase -
  LA331_RS09310 (LA331_09310) pilB 1874749..1876458 (+) 1710 WP_005233533.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LA331_RS09315 (LA331_09315) pilC 1876489..1877718 (+) 1230 WP_004787210.1 type II secretion system F family protein Machinery gene
  LA331_RS09320 (LA331_09320) pilD 1877718..1878578 (+) 861 WP_005233531.1 prepilin peptidase Machinery gene
  LA331_RS09325 (LA331_09325) coaE 1878580..1879185 (+) 606 WP_005233529.1 dephospho-CoA kinase -
  LA331_RS09330 (LA331_09330) - 1879224..1880141 (-) 918 WP_005233528.1 DMT family transporter -
  LA331_RS09335 (LA331_09335) rlmB 1880187..1880936 (-) 750 WP_005233526.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LA331_RS09340 (LA331_09340) - 1881079..1881402 (-) 324 WP_004787221.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44858.27 Da        Isoelectric Point: 9.7923

>NTDB_id=607187 LA331_RS09315 WP_004787210.1 1876489..1877718(+) (pilC) [Acinetobacter variabilis strain FDAARGOS_1487]
MAAVKKGQMTPIFSYEGVDRKGAKIKGELPARNMALAKVNLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVLKIKEDV
ATGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=607187 LA331_RS09315 WP_004787210.1 1876489..1877718(+) (pilC) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGGCAGCAGTAAAAAAAGGCCAGATGACACCGATCTTCAGTTATGAAGGGGTTGACCGCAAAGGCGCCAAGATCAAGGG
GGAATTGCCGGCACGAAATATGGCCTTAGCAAAAGTGAACTTGCGCAAACAAGGCATTACGATCAAAACTATTCGAGAAA
AGAAAAAAAATATTCTCGAAGGTTTGATGAAGAAAAAAGTTTCTACACTGGATATCACTATCTTCACCCGTCAGCTCGCT
ACTATGATGAAAGCTGGGGTACCGTTAGTTCAGGGCTTTGAAATTGTTGCGGAAGGTTTGGAAAATCCTTCTATGCGCGA
GGTTGTGCTTGGAATTAAAGGTGAAGTCGAAGGCGGGAATACTTTCGCTGGTGCTCTACGTAAGTACCCGCAATATTTCG
ATAATCTATTCTGCTCTTTGGTCGAATCTGGCGAACAATCGGGTGCTCTGGAAACCATGCTGGATCGTGTCGCAATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATATCCAGCTACAGTTATTGTAGTAGCTGTGAT
CGTCACAATTATCCTGATGGTGAAAGTAGTCCCTGTATTCCAAGACTTATTCTCTTCATTCGGTGCGGACTTACCTGCAT
TTACTAAAATGGTAGTCAATATGTCCGAATGGATGCAAAAATATTGGTTCCTTTTGATTATTGGAATTGGCGTAGTGATT
ACTGCTTTCCTTGAAGCGAAAAAGCGTAGCAAAAAATTTCGCGATTTACTGGATAAAGCTGCGCTCAAAGCGCCCATCTT
TGGTGATCTGGTCTATAAAGCAATCATTGCCCGTTATAGCCGCACTCTCGCCACCACTTTTGCTGCCGGTGTGCCATTAA
TTGATGCGCTTGAATCGACTGCTGGTGCAACCAATAACGTGGTCTATGAGGAGGCGGTATTAAAAATCAAGGAAGATGTT
GCGACAGGTCAACAGCTTCAATTTGCCATGCGTGTCACCGATAAATTCCCTTCTATGGCCGTACAAATGGTTGCAATTGG
TGAAGAATCAGGTGCATTGGATGCCATGCTGGATAAAGTCGCAACCCATTATGAAAATGAAGTCGACAATGCGGTCGACG
GTTTAACTTCCATGATGGAGCCCTTGATTATGGCAATTCTTGGTGTCCTTGTTGGTGGCCTTGTTATCGCAATGTACCTT
CCAATTTTCCAAATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9P8Z0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

83.538

99.511

0.831
  pilC Pseudomonas stutzeri DSM 10701

62.563

97.311

0.609
  pilC Legionella pneumophila strain ERS1305867

53.401

97.066

0.518
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

42.402

99.756

0.423
  pilC Vibrio campbellii strain DS40M4

41.709

97.311

0.406