Detailed information NTG0607188

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LA331_RS09320
• Genome accession: NZ_CP083658
• Coordinates: 1877718..1878578 (+)
• Length: 286 a.a.
• NCBI ID: WP_005233531.1
• Uniprot ID: N9MQ38
• Organism: Acinetobacter variabilis strain FDAARGOS_1487
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1872718..1883578

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA331_RS09300 (LA331_09300)	secG	1873335..1873664 (-)	330	WP_004787204.1	preprotein translocase subunit SecG	-
LA331_RS09305 (LA331_09305)	tpiA	1873678..1874469 (-)	792	WP_005233535.1	triose-phosphate isomerase	-
LA331_RS09310 (LA331_09310)	pilB	1874749..1876458 (+)	1710	WP_005233533.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LA331_RS09315 (LA331_09315)	pilC	1876489..1877718 (+)	1230	WP_004787210.1	type II secretion system F family protein	Machinery gene
LA331_RS09320 (LA331_09320)	pilD	1877718..1878578 (+)	861	WP_005233531.1	prepilin peptidase	Machinery gene
LA331_RS09325 (LA331_09325)	coaE	1878580..1879185 (+)	606	WP_005233529.1	dephospho-CoA kinase	-
LA331_RS09330 (LA331_09330)	-	1879224..1880141 (-)	918	WP_005233528.1	DMT family transporter	-
LA331_RS09335 (LA331_09335)	rlmB	1880187..1880936 (-)	750	WP_005233526.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LA331_RS09340 (LA331_09340)	-	1881079..1881402 (-)	324	WP_004787221.1	pyrimidine/purine nucleoside phosphorylase	-
LA331_RS09345 (LA331_09345)	recN	1881840..1883501 (+)	1662	WP_005233524.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32109.39 Da
• Isoelectric Point: 8.0503

>NTDB_id=607188 LA331_RS09320 WP_005233531.1 1877718..1878578(+) (pilD) [Acinetobacter variabilis strain FDAARGOS_1487]
MQDFILYFSQNPTALYLAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP
IRWYQNIPVISWILLRGKCGNCQNPISIRYPFIELLTAACALIVVAVFGPTIQMLFGLVFTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGINSYAIYTTPNSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=607188 LA331_RS09320 WP_005233531.1 1877718..1878578(+) (pilD) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGCAAGATTTTATTTTATATTTCAGTCAAAACCCAACTGCGCTTTATCTCGCAGTTGGGCTTTTTAGTCTCTGTATTGG
TAGCTTTTTAAACGTTGTCATTTACCGCACCCCTAAAATGATGGAACAGGAATGGCGTACAGATTGCCAGCTGTTTTTGC
ATCCAGATCAGCCCATTATTGATGAAAGCAAAATTACTTTAAGCAAGCCAGCTTCAACCTGCCCGAAATGTCAGACTCCT
ATTCGCTGGTATCAGAATATTCCGGTGATTAGCTGGATCTTATTACGTGGTAAATGTGGTAACTGTCAAAATCCTATCAG
TATCCGCTATCCATTTATTGAGCTTTTGACAGCTGCTTGTGCACTGATAGTGGTGGCAGTATTCGGGCCTACAATACAGA
TGCTGTTTGGTTTGGTTTTTACCTATGTCCTGATTGCCCTCACCTTTATTGATTTCGACACCCAGTTATTACCCGATCGC
TATACCCTACCGCTGGCTGCACTCGGCCTGGGTATTAATAGTTATGCGATTTATACGACCCCTAATTCTGCCATCTGGGG
ATATATCATTGGCTTCTTATGCTTATGGGTGGTGTACTATCTGTTTAAGCTGGTGACCGGTAAGGAAGGTATGGGCTATG
GGGATTTCAAACTGTTAGCGGCCCTAGGTGCTTGGATGGGCCCTATGCTTCTACCGTTAATTGTATTATTGTCCTCATTA
GTGGGTGCGATTATTGGGATTATCCTGCTTAAAGTCCGTAAAGAAAATCAGCCCTTTGCCTTTGGCCCTTATATTGCTAT
TGCCGGCTGGATTGCCTTTTTATGGGGTGAGCAGATCATGAAAATCTATTTAGGTCAGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: N9MQ38

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	81.754	99.65	0.815
pilD	Acinetobacter nosocomialis M2	81.404	99.65	0.811
pilD	Vibrio campbellii strain DS40M4	52.688	97.552	0.514
pilD	Vibrio cholerae strain A1552	54.682	93.357	0.51
pilD	Neisseria gonorrhoeae MS11	47.619	95.455	0.455