Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LA331_RS09085 Genome accession   NZ_CP083658
Coordinates   1828816..1830984 (-) Length   722 a.a.
NCBI ID   WP_005233591.1    Uniprot ID   N9MQ67
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1823816..1835984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09070 (LA331_09070) - 1826271..1827122 (-) 852 WP_005233595.1 hypothetical protein -
  LA331_RS09075 (LA331_09075) aroB 1827135..1828214 (-) 1080 WP_005233594.1 3-dehydroquinate synthase -
  LA331_RS09080 (LA331_09080) aroK 1828243..1828779 (-) 537 WP_005233593.1 shikimate kinase AroK -
  LA331_RS09085 (LA331_09085) pilQ 1828816..1830984 (-) 2169 WP_005233591.1 type IV pilus secretin PilQ family protein Machinery gene
  LA331_RS09090 (LA331_09090) pilP 1831001..1831528 (-) 528 WP_005233589.1 pilus assembly protein PilP Machinery gene
  LA331_RS09095 (LA331_09095) comO 1831528..1832244 (-) 717 WP_005233587.1 type 4a pilus biogenesis protein PilO Machinery gene
  LA331_RS09100 (LA331_09100) comN 1832241..1832879 (-) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  LA331_RS09105 (LA331_09105) pilM 1832879..1833937 (-) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 78516.78 Da        Isoelectric Point: 4.9467

>NTDB_id=607181 LA331_RS09085 WP_005233591.1 1828816..1830984(-) (pilQ) [Acinetobacter variabilis strain FDAARGOS_1487]
MNKSIKEFIFGDDNTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFNEAQQNLKQSSIPVATAEASSLDVSSDAQRSRLTVNLANAGAFTTRVEGNTFILKINSVTPVAITQPVQQQVAQGVT
NIGFQRGAQGEGLVVIDLAGQNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQSAE
SYEYMAFQTDNKLTISLKRPEVKGPLRPKSVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVAELIKAEEEEAKALKQSVALAPIQTEYMQLSYAKAADIEKLITQNKSASGSG
NSSNSTNNDDKESLLSSRGSISIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGIL
SQGITNNNHLLVGGSDTTLWDLREPELDSERGGWSYEIQRPDNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQAD
GYGEVISTPKVLTADKQKATVASGSQIPYQSSEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTP
TGQLTINKNQINTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDLPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSR
NH

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=607181 LA331_RS09085 WP_005233591.1 1828816..1830984(-) (pilQ) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGATAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
TGTCGCGATTGCTGTGATGCAAGCGGCTAGTGCGCAGGTTTCAATGACCAATGTGGTACCCATGCAGATTCCTGGACAGG
GAACTGAAATCCGAGTGATGTTTAACGGTCTACCACCTCAGCCTCAAGCCTATCAGCTGGAATCTCCATCACGCCTGATT
CTGGATTTTAATGAGGCACAACAAAATCTAAAACAGTCTAGTATTCCAGTTGCGACTGCTGAAGCCAGTTCATTGGATGT
TAGCTCAGATGCACAGCGTTCTCGACTGACGGTGAATCTCGCTAATGCAGGTGCATTTACTACGCGTGTAGAAGGCAATA
CCTTTATTTTAAAAATTAATTCTGTTACTCCAGTCGCTATTACTCAGCCTGTACAACAACAGGTCGCTCAGGGGGTTACC
AATATTGGTTTCCAGCGGGGGGCGCAAGGTGAAGGGTTGGTGGTAATTGATCTGGCAGGTCAGAACACACCAGTCGATGT
ACAGCAGCAGGGAACCAAAGTGATTGTACGGACTCTGGGCTCCAAGATTCCGGCACATTTGACCCGACGTTTGAATGTGA
ATGATTTTGCCACGCCCGTTTCAACCGTAGATGCAGTCAACCAGAATGGATCAGGCGTGATTACCATTCAGTCTGCGGAA
AGCTATGAATATATGGCTTTCCAGACAGATAATAAGCTGACTATCAGTTTGAAGCGTCCAGAAGTTAAAGGGCCTTTACG
TCCTAAATCAGTCGCTTATACAGGTAAGAAGATTTCTCTAGATTTTCAGGATATTGAAGTCCGTCGAGTTCTACAGTTAT
TAGCCGATTTTACCGATATCAATATGGTTGCTGCAGATAGCGTACAGGGTAATATTACCTTACGCCTCAAGGAAGTTCCT
TGGGATCAGGCTTTAGATATTGTGTTAAAAACTAAAAATCTGGATAAACGCCGTAATGGTAATGTGATCTGGATTGCACC
GGTGGCAGAACTAATTAAGGCTGAAGAAGAGGAAGCTAAGGCTTTAAAACAAAGCGTTGCACTTGCGCCAATTCAAACTG
AATATATGCAACTCAGTTATGCAAAGGCAGCAGATATTGAAAAGCTGATTACTCAAAATAAGAGCGCATCAGGATCAGGT
AATTCAAGTAATAGTACTAATAACGACGATAAAGAAAGTTTATTAAGTTCACGTGGCTCTATCTCTATTGATGCTCGTAC
CAATACGATTATTGTGAATGATACCCAGCCTTTCATTGATAAAATTCGCAATATGGTCGATCTACTTGATGTGCAAGTGA
AACAGGTGATGGTTGAGGCGCGTATCGTTCGTGCAACCACTGACTTTACTAAAGAAATGGGTGTGAAATGGGGAATCCTA
TCTCAAGGGATTACCAATAATAATCACCTTCTTGTTGGTGGTAGTGATACGACTCTTTGGGATCTTAGGGAGCCTGAGCT
TGATAGTGAGAGAGGGGGATGGAGTTATGAAATTCAAAGACCAGATAACCTGAATGTGGATTTAGGTGTCACTAGTCAAG
GAGCAAGCCGTATTGCTTTTGGCTTAATCAGCCTTTCAGATTTTATGCTGGATCTTGAACTTTCTGCGCTACAGGCAGAC
GGTTATGGTGAAGTGATTTCTACGCCAAAAGTGCTCACTGCTGACAAACAAAAAGCGACTGTGGCATCTGGTTCCCAAAT
TCCTTATCAGTCTTCAGAAGGCGGTGGTGCTAATGCAGTGTCGACTACAGAGTTTATTGATGCAACTTTAAGTTTGGACG
TTACACCAAGTATTACGCCAGATGGCAAGGTGCAAATGGAGTTGAATATAACCAGTGACTCACCAGGAAATCCGACACCA
ACTGGACAGTTAACCATTAATAAAAACCAGATCAATACTAATGTACTGGTTGATAATGGTGAAACAGTGGTGTTAGGTGG
TATTTTTGAGCAAGAAACTCGAAATGCGCAAACTAAAGTTCCTTTCTTGGGTGATCTACCTTATTTAGGTCGTTTGTTCC
GCAAAGATGTTAAATCAGATAACAAGCGTGAGTTGCTGATTTTTGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGA
AATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-347)

AMIN domain (AMIN)

(55-137)

Bacterial type II and III secretion system protein (Secretin)

(556-714)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MQ67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.546

100

0.735
  pilQ Acinetobacter baumannii strain A118

73.407

100

0.734
  comQ Acinetobacter baylyi ADP1

69.735

99.307

0.693
  pilQ Pseudomonas aeruginosa PAK

41.092

96.399

0.396
  pilQ Legionella pneumophila strain Lp02

37.659

98.199

0.37
  pilQ Legionella pneumophila strain ERS1305867

37.696

97.368

0.367