Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LA331_RS09100 Genome accession   NZ_CP083658
Coordinates   1832241..1832879 (-) Length   212 a.a.
NCBI ID   WP_005233586.1    Uniprot ID   A0A2L0I1Q6
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827241..1837879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09080 (LA331_09080) aroK 1828243..1828779 (-) 537 WP_005233593.1 shikimate kinase AroK -
  LA331_RS09085 (LA331_09085) pilQ 1828816..1830984 (-) 2169 WP_005233591.1 type IV pilus secretin PilQ family protein Machinery gene
  LA331_RS09090 (LA331_09090) pilP 1831001..1831528 (-) 528 WP_005233589.1 pilus assembly protein PilP Machinery gene
  LA331_RS09095 (LA331_09095) comO 1831528..1832244 (-) 717 WP_005233587.1 type 4a pilus biogenesis protein PilO Machinery gene
  LA331_RS09100 (LA331_09100) comN 1832241..1832879 (-) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  LA331_RS09105 (LA331_09105) pilM 1832879..1833937 (-) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  LA331_RS09110 (LA331_09110) ponA 1834104..1836632 (+) 2529 WP_005233584.1 penicillin-binding protein PBP1a -
  LA331_RS09115 (LA331_09115) - 1836691..1837494 (-) 804 WP_005233583.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23734.91 Da        Isoelectric Point: 4.7909

>NTDB_id=607184 LA331_RS09100 WP_005233586.1 1832241..1832879(-) (comN) [Acinetobacter variabilis strain FDAARGOS_1487]
MAKINLLPWRDELRIKRNNEFVAICAGALFLGLAAAGSTWFYYDQKLQDQEQANQLVVSTNQNLDVQLKALDGLQDQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRTGDKFTIEGKAESPNTVAELLRNLEASTWYRNAFMNAFLV
AEEPKDKAPSSVIPRVEESYGSFTVTVDLDQIAEPTLKEGQTPATTTAEASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=607184 LA331_RS09100 WP_005233586.1 1832241..1832879(-) (comN) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTAGCGATTTGCGCAGG
GGCACTTTTTCTAGGATTGGCAGCAGCAGGTTCAACCTGGTTCTACTATGATCAAAAACTTCAGGATCAGGAACAGGCCA
ACCAGCTAGTGGTCAGTACTAACCAGAATCTGGATGTACAGCTGAAAGCATTGGATGGCTTACAAGACCAGCGTAATGCA
ATTGTTGAACGTATGAAGCTGATTCAGGGTTTACAGACTCAACGGCCGATCGCAGTCCACCTGATTGATGAAATTGTACG
GGTCACACCAAGCAATATGTACATTACCAAATTTCAGCGTACCGGTGATAAATTCACTATTGAAGGTAAGGCAGAAAGTC
CGAATACAGTGGCTGAATTGCTACGTAATCTGGAGGCTTCTACCTGGTATCGTAATGCATTTATGAATGCTTTCCTGGTT
GCTGAAGAACCAAAAGATAAAGCGCCATCATCAGTGATTCCTCGAGTGGAAGAATCTTATGGCAGCTTTACGGTCACGGT
TGATCTGGATCAAATCGCTGAGCCAACACTTAAAGAAGGACAAACACCAGCCACAACTACAGCGGAGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0I1Q6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

70.531

97.642

0.689
  pilN Acinetobacter baumannii D1279779

68.293

96.698

0.66