Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LA331_RS09095 Genome accession   NZ_CP083658
Coordinates   1831528..1832244 (-) Length   238 a.a.
NCBI ID   WP_005233587.1    Uniprot ID   N9P796
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826528..1837244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09075 (LA331_09075) aroB 1827135..1828214 (-) 1080 WP_005233594.1 3-dehydroquinate synthase -
  LA331_RS09080 (LA331_09080) aroK 1828243..1828779 (-) 537 WP_005233593.1 shikimate kinase AroK -
  LA331_RS09085 (LA331_09085) pilQ 1828816..1830984 (-) 2169 WP_005233591.1 type IV pilus secretin PilQ family protein Machinery gene
  LA331_RS09090 (LA331_09090) pilP 1831001..1831528 (-) 528 WP_005233589.1 pilus assembly protein PilP Machinery gene
  LA331_RS09095 (LA331_09095) comO 1831528..1832244 (-) 717 WP_005233587.1 type 4a pilus biogenesis protein PilO Machinery gene
  LA331_RS09100 (LA331_09100) comN 1832241..1832879 (-) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  LA331_RS09105 (LA331_09105) pilM 1832879..1833937 (-) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  LA331_RS09110 (LA331_09110) ponA 1834104..1836632 (+) 2529 WP_005233584.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27077.70 Da        Isoelectric Point: 4.6843

>NTDB_id=607183 LA331_RS09095 WP_005233587.1 1831528..1832244(-) (comO) [Acinetobacter variabilis strain FDAARGOS_1487]
MSNDEFDELSQDVVAVPRKKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIVILVFMLGYFGFIRGKIEAISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNADASSTPATTDTQGAQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=607183 LA331_RS09095 WP_005233587.1 1831528..1832244(-) (comO) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGAGTAATGACGAATTCGATGAATTAAGCCAAGACGTAGTGGCTGTTCCTAGAAAAAAAATGACAGTTGAGAAATTCTT
TCAACAATTCAATACACTAGATCCAAATAATTATGGCAGCTGGCCATTATCAGTCAAGATTACCTGCTGGATCTTTATTG
TTATTCTGGTTTTTATGCTGGGGTATTTCGGGTTTATTCGCGGCAAGATAGAAGCAATTTCACAAGCCAGTGCTCAAGAA
CAAAACCTGTTAAATGAATTCCGGGAAAAGGAATCCAAGCTGCGTAATTTACAGCAGTATCAGATTCAGTTGCAGGAGAT
GGAAGCACGTTTTAATCAGCAATTGGAACAATTGCCGAAAGAAACTGAAATTCCTGGCCTGGTTGAAGATATTAACCTGA
GTGGGGTGAACTCTGGACTGAAATTCAAGAATATTCGTCTTGAACCTGAAATCAAGCAGGAATTCTTTATTGAGCAGCCG
ATCGCGATTGAAGCCACTGGGGATTATCATGCCTTTGGTTCTTTTGTGAGTAGTATTGCAGGACTTTCGCGCATCGTTAC
ACTGCATGACTTCACCATTACAGGGACTGAAAATAAAGAAAAGAAATCTGAAATTCCTGTCATTGATTATGTGGTAAAAG
CGAAAACCTATCGTTATGTAGGTAATGCAGATGCTTCATCTACTCCGGCTACAACTGATACGCAGGGAGCTCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9P796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.623

100

0.693
  pilO Acinetobacter baumannii D1279779

72.566

94.958

0.689