Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LA331_RS09090 Genome accession   NZ_CP083658
Coordinates   1831001..1831528 (-) Length   175 a.a.
NCBI ID   WP_005233589.1    Uniprot ID   N9MQ47
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826001..1836528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09070 (LA331_09070) - 1826271..1827122 (-) 852 WP_005233595.1 hypothetical protein -
  LA331_RS09075 (LA331_09075) aroB 1827135..1828214 (-) 1080 WP_005233594.1 3-dehydroquinate synthase -
  LA331_RS09080 (LA331_09080) aroK 1828243..1828779 (-) 537 WP_005233593.1 shikimate kinase AroK -
  LA331_RS09085 (LA331_09085) pilQ 1828816..1830984 (-) 2169 WP_005233591.1 type IV pilus secretin PilQ family protein Machinery gene
  LA331_RS09090 (LA331_09090) pilP 1831001..1831528 (-) 528 WP_005233589.1 pilus assembly protein PilP Machinery gene
  LA331_RS09095 (LA331_09095) comO 1831528..1832244 (-) 717 WP_005233587.1 type 4a pilus biogenesis protein PilO Machinery gene
  LA331_RS09100 (LA331_09100) comN 1832241..1832879 (-) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  LA331_RS09105 (LA331_09105) pilM 1832879..1833937 (-) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19458.67 Da        Isoelectric Point: 7.1662

>NTDB_id=607182 LA331_RS09090 WP_005233589.1 1831001..1831528(-) (pilP) [Acinetobacter variabilis strain FDAARGOS_1487]
MNIIKITSVLTLGFLLVGCESRIDAVNQEMANIRNQPPLPIEPAPDFIPTEMFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQVGQILALIQTPDGEIERIQRGSYMGLNHGRVTRITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=607182 LA331_RS09090 WP_005233589.1 1831001..1831528(-) (pilP) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGAATATCATTAAAATTACTTCAGTTTTAACGCTCGGATTTTTATTGGTGGGTTGTGAATCAAGAATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAACCGCCATTACCGATTGAACCGGCGCCGGATTTTATTCCGACAGAAATGTTTA
ATTATGCAGCTCATCAGCTGAAAAGTCCTTTCCTGCCAAGCTCTTTAGCAGCCGAATTGAAAATTATGGCAGGTAAGCGA
GTTTATCCGAACTTGTCACGCCAATTACAGCCTTTAGAAAGCTATCCACTCGAAACCTTAAGCATGAAAGGCAGTATGCG
GAATCAGGTGGGGCAGATTCTGGCTTTGATTCAAACGCCTGATGGGGAAATTGAACGGATACAACGTGGCAGCTATATGG
GACTTAATCACGGTCGTGTAACGAGAATTACGCCGACACAGATTGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCACGAAGTCTGGTTTTGATTGGGCCAGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MQ47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.714

100

0.777
  comL Acinetobacter baylyi ADP1

70.93

98.286

0.697