Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEDC_RS01535 Genome accession   NZ_CP083571
Coordinates   329031..331154 (+) Length   707 a.a.
NCBI ID   WP_374952414.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324031..336154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS01515 (ABEDC_0312) pilM 326038..327096 (+) 1059 WP_004281140.1 pilus assembly protein PilM Machinery gene
  ABEDC_RS01520 (ABEDC_0313) comN 327096..327734 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABEDC_RS01525 (ABEDC_0314) comO 327731..328441 (+) 711 WP_191111812.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEDC_RS01530 (ABEDC_0315) pilP 328441..328968 (+) 528 WP_005101384.1 pilus assembly protein PilP Machinery gene
  ABEDC_RS01535 (ABEDC_0316) pilQ 329031..331154 (+) 2124 WP_374952414.1 type IV pilus secretin PilQ Machinery gene
  ABEDC_RS01540 (ABEDC_0317) aroK 331191..331727 (+) 537 WP_005101380.1 shikimate kinase AroK -
  ABEDC_RS01545 (ABEDC_0318) aroB 331756..332835 (+) 1080 WP_005101377.1 3-dehydroquinate synthase -
  ABEDC_RS01550 (ABEDC_0319) - 332846..333724 (+) 879 WP_005101375.1 hypothetical protein -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76853.00 Da        Isoelectric Point: 5.0698

>NTDB_id=606227 ABEDC_RS01535 WP_374952414.1 329031..331154(+) (pilQ) [Acinetobacter lwoffii strain ED9-5a]
MNRVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFDKAQQNLKQSSI
PVATREASSVDVTSDAQRARLTVNLTEAGAFTTRVEGNTFILKINSATPVAIAQPVQQQSAQGISNIGFQRGTQGEGQVV
IDLLGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVTDFATPVSSVDAVNQNGSGVITIQSAESYEYMAYQTDNKLTI
SLKRPEAKSPLRPKTVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKGASSSGSSANTTNNDDRESLL
SSRGSVSIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGILSQGVTNNNHLLVGGS
DTTLWDLRTPELDEELGGWKYEIQRPDNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTAD
KQKATVASGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPTGQLTINKNQINTNV
LVDNGETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDLKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=606227 ABEDC_RS01535 WP_374952414.1 329031..331154(+) (pilQ) [Acinetobacter lwoffii strain ED9-5a]
ATGAATCGTGTGTTTCGTCAGTTTTCCATGGGTGCTGTTGCGATTGCGGTGATGCAAGCGGCCAGTGCGCAGGTTTCAAT
GACCAATGTAGTACCCATGCAGCTTCCTGGACAAGGAACTGAGATTCGGGTGATGTTCAATGGTTTGCCGCCACAACCAC
AAGCCTATCAATTAGAATCACCATCACGTTTGATTCTGGACTTTGATAAGGCACAACAGAATTTAAAACAAAGCAGTATT
CCGGTGGCAACACGTGAAGCTAGTTCGGTAGATGTCACTTCGGATGCTCAGCGTGCACGTCTGACGGTAAATCTGACCGA
GGCTGGAGCCTTTACGACTCGTGTAGAAGGTAATACCTTTATTCTTAAAATTAACTCGGCAACTCCTGTAGCCATAGCTC
AACCTGTGCAGCAACAGTCAGCTCAGGGTATTAGCAACATTGGTTTCCAGCGCGGTACGCAAGGTGAAGGCCAGGTCGTT
ATTGATCTGTTAGGAAATAATACTCCTGTTGATGTACAGCAGCAGGGTACCAAAGTTATTGTGCGCACTTTAGGTTCCAA
GATTCCGGCTCATTTGACCCGCCGTCTTAATGTGACTGATTTCGCGACTCCGGTATCCAGTGTCGATGCCGTGAATCAAA
ATGGTTCAGGCGTGATTACGATTCAGTCTGCGGAAAGTTATGAATATATGGCTTACCAGACTGATAATAAGCTGACCATC
AGTTTGAAACGTCCGGAAGCCAAGAGCCCATTACGTCCTAAAACTGTCGCTTATACTGGCAAGAAAATTTCTTTAGATTT
TCAGGACATCGAAGTCCGTCGTGTACTCCAGCTTTTAGCTGATTTCACTGATATCAATATGGTGGCAGCAGATAGTGTGC
AAGGCAATATTACTTTGCGCTTAAAGGAAGTGCCTTGGGATCAGGCCTTGGATATTGTGCTGAAAACCAAAAATCTGGAT
AAACGTCGTAATGGTAATGTGATCTGGATTGCACCGGTTGCAGAACTGATTAAGGCTGAAGAAGAAGAAGCTAAGGCGAT
TAAGCAAAGTGTTGCACTTGCCCCGATCCAAACTGAATATATGCAGTTGAGTTATGCCAAAGCGGCAGATATTGAGAAAC
TGATTACGCAGAATAAAGGCGCATCTAGTTCGGGTAGTTCGGCTAATACTACAAATAATGATGATAGAGAAAGCTTATTG
AGTTCACGTGGCTCTGTGTCTATTGATGCACGAACCAATACCATTATTGTGAATGATACCCAGCCTTTTATTGATAAAAT
CCGTAATATGGTAGATCTGCTCGATGTACAGGTAAAGCAGGTTATGGTTGAAGCGCGTATTGTGCGGGCAACAACTGATT
TTACGAAAGAGATGGGAGTGAAATGGGGGATTCTATCTCAAGGGGTTACAAATAATAATCATCTTCTTGTGGGTGGTAGC
GATACAACCTTATGGGATTTAAGAACCCCTGAGTTGGATGAAGAATTGGGTGGATGGAAGTATGAAATCCAAAGACCTGA
TAATCTAAATGTAGACTTGGGCGTAACAAGTCCAGGTGCCAGTCGTATAGCCTTTGGTTTAATCAGTCTTTCTGATTTTA
TGCTGGATCTTGAGCTTTCTGCACTTCAGGCAGATGGCTATGGTGAAGTGATTTCTACACCTAAAGTACTGACAGCGGAT
AAGCAAAAAGCGACTGTTGCATCTGGTTCACAAATTCCGTACCAGTCAGCAGAAGGTGGTGGTGCGAATGCAGTATCTAC
TACGGAATTTATTGATGCCACCTTAAGTCTGGATGTTACGCCAAGTATTACGCCAGATGGTAAAGTGCAGATGGAACTCA
ATATTACCAGTGACTCTCCAGGGAACCCGACACCGACCGGACAGCTCACTATTAACAAAAACCAGATCAATACCAATGTC
CTGGTTGATAATGGTGAAACAGTGGTTCTAGGTGGTATTTTTGAGCAGGAAACCCGTAATGCGCAAACCAAGGTGCCATT
CTTGGGGGATATTCCTTATGTAGGACGTTTATTCCGTAAAGATTTAAAGTCGGATAATAAACGTGAGCTACTGATTTTCG
TTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-440)

Bacterial type II and III secretion system protein (Secretin)

(541-699)

Secretin and TonB N terminus short domain (STN)

(290-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.562

100

0.76
  pilQ Acinetobacter baumannii strain A118

73.425

100

0.758
  comQ Acinetobacter baylyi ADP1

70.293

100

0.713
  pilQ Pseudomonas aeruginosa PAK

41.523

98.444

0.409
  pilQ Legionella pneumophila strain Lp02

37.377

100

0.375
  pilQ Legionella pneumophila strain ERS1305867

37.411

99.434

0.372