Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ABEDC_RS01520 Genome accession   NZ_CP083571
Coordinates   327096..327734 (+) Length   212 a.a.
NCBI ID   WP_004281141.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322096..332734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS01510 (ABEDC_0311) ponA 323347..325872 (-) 2526 WP_191111810.1 penicillin-binding protein PBP1a -
  ABEDC_RS01515 (ABEDC_0312) pilM 326038..327096 (+) 1059 WP_004281140.1 pilus assembly protein PilM Machinery gene
  ABEDC_RS01520 (ABEDC_0313) comN 327096..327734 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABEDC_RS01525 (ABEDC_0314) comO 327731..328441 (+) 711 WP_191111812.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEDC_RS01530 (ABEDC_0315) pilP 328441..328968 (+) 528 WP_005101384.1 pilus assembly protein PilP Machinery gene
  ABEDC_RS01535 (ABEDC_0316) pilQ 329031..331154 (+) 2124 WP_374952414.1 type IV pilus secretin PilQ Machinery gene
  ABEDC_RS01540 (ABEDC_0317) aroK 331191..331727 (+) 537 WP_005101380.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23911.14 Da        Isoelectric Point: 4.9286

>NTDB_id=606224 ABEDC_RS01520 WP_004281141.1 327096..327734(+) (comN) [Acinetobacter lwoffii strain ED9-5a]
MARINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRIGDKFTIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEEAKEKAPSSIIPRVEESYGSFTVTVDLDQIAQPVLNEEQQAVATTTGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=606224 ABEDC_RS01520 WP_004281141.1 327096..327734(+) (comN) [Acinetobacter lwoffii strain ED9-5a]
ATGGCAAGAATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTCGTGGCAATCTGCGTGGG
GGCGCTTTTCTTGGGATTAGCAGCAGCAGGTTCTACTTGGTTTTATTATGATCACAAGCTTCAGGATCAGGAACAGGCCA
ATCAGCTGATTCAAAGTACCAACCAGAATCTGGATGTGCAGTTAAAGGCGCTTGAAGGTTTACAAGAACAGCGTAATGCA
ATTGTTGAACGGATGAAACTGATTCAGGGCCTACAAACCCAACGTCCGATTGCAGTGCATCTGATTGATGAAATTGTGCG
GGTGACTCCAAGCAATATGTATATCACCAAATTCCAGCGTATCGGTGATAAGTTTACCATTGAAGGTCGAGCTGAGAGTC
CAAATACGGTAGCAGAACTGCTCCGTAATCTGGAAGCTTCATCTTGGTATCGGAATGCCTTTATGAATGCCTTCCTGGTG
GCTGAAGAAGCAAAAGAAAAGGCACCGAGCTCGATTATTCCACGTGTGGAAGAATCTTATGGCAGTTTTACTGTAACTGT
GGATCTGGATCAGATCGCTCAGCCAGTACTTAACGAAGAACAACAAGCAGTCGCTACAACTACGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

66.986

98.585

0.66
  pilN Acinetobacter baumannii D1279779

70.984

91.038

0.646