Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABEDC_RS01530 Genome accession   NZ_CP083571
Coordinates   328441..328968 (+) Length   175 a.a.
NCBI ID   WP_005101384.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323441..333968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS01515 (ABEDC_0312) pilM 326038..327096 (+) 1059 WP_004281140.1 pilus assembly protein PilM Machinery gene
  ABEDC_RS01520 (ABEDC_0313) comN 327096..327734 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABEDC_RS01525 (ABEDC_0314) comO 327731..328441 (+) 711 WP_191111812.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEDC_RS01530 (ABEDC_0315) pilP 328441..328968 (+) 528 WP_005101384.1 pilus assembly protein PilP Machinery gene
  ABEDC_RS01535 (ABEDC_0316) pilQ 329031..331154 (+) 2124 WP_374952414.1 type IV pilus secretin PilQ Machinery gene
  ABEDC_RS01540 (ABEDC_0317) aroK 331191..331727 (+) 537 WP_005101380.1 shikimate kinase AroK -
  ABEDC_RS01545 (ABEDC_0318) aroB 331756..332835 (+) 1080 WP_005101377.1 3-dehydroquinate synthase -
  ABEDC_RS01550 (ABEDC_0319) - 332846..333724 (+) 879 WP_005101375.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19314.50 Da        Isoelectric Point: 7.1658

>NTDB_id=606226 ABEDC_RS01530 WP_005101384.1 328441..328968(+) (pilP) [Acinetobacter lwoffii strain ED9-5a]
MKNIKITSALMLGFLLLGCDSRIDAVNQEMANIRNQPPLPIEPAPDFIPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLTMKGSMRNQAGQILALIQTPDGEVERIQRGSYMGLNHGRVVGITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=606226 ABEDC_RS01530 WP_005101384.1 328441..328968(+) (pilP) [Acinetobacter lwoffii strain ED9-5a]
ATGAAGAACATTAAAATTACTTCGGCTTTAATGCTTGGGTTTTTATTATTGGGATGTGATTCACGCATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAGCCACCTTTGCCGATTGAACCTGCGCCTGATTTTATCCCAGTTGAAACCTTCA
ACTATGCGGCACATCAGATCAAAAGTCCTTTTTTACCAAGTTCTTTGGCTGCTGAACTGAAAATTATGGCGGGGAAACGG
GTTTATCCAAACCTATCACGTCAATTGCAACCGCTAGAAAGTTATCCGCTGGAAACATTGACCATGAAAGGCAGTATGCG
CAATCAGGCAGGACAGATTCTGGCTTTAATCCAGACGCCTGATGGTGAGGTTGAGCGGATCCAACGTGGTAGCTATATGG
GACTTAATCATGGTCGTGTGGTTGGGATTACACCAACACAGATCGATTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCGCGAAGTCTGGTTCTTATCGGACCAGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.766
  comL Acinetobacter baylyi ADP1

72.189

96.571

0.697