Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LAD35_RS17135 Genome accession   NZ_CP083451
Coordinates   3709860..3711080 (+) Length   406 a.a.
NCBI ID   WP_224150172.1    Uniprot ID   -
Organism   Comamonas odontotermitis strain WLL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3704860..3716080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAD35_RS17115 (LAD35_17115) rpmA 3706142..3706402 (-) 261 WP_184707125.1 50S ribosomal protein L27 -
  LAD35_RS17120 (LAD35_17120) rplU 3706432..3706743 (-) 312 WP_184707123.1 50S ribosomal protein L21 -
  LAD35_RS17125 (LAD35_17125) - 3707012..3707941 (+) 930 WP_224152754.1 polyprenyl synthetase family protein -
  LAD35_RS17130 (LAD35_17130) pilB 3708103..3709839 (+) 1737 WP_224150171.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LAD35_RS17135 (LAD35_17135) pilC 3709860..3711080 (+) 1221 WP_224150172.1 type II secretion system F family protein Machinery gene
  LAD35_RS17140 (LAD35_17140) pilD 3711083..3711946 (+) 864 WP_224150173.1 A24 family peptidase Machinery gene
  LAD35_RS17145 (LAD35_17145) coaE 3711965..3712588 (+) 624 WP_224150174.1 dephospho-CoA kinase -
  LAD35_RS17150 (LAD35_17150) zapD 3712598..3713353 (+) 756 WP_224150175.1 cell division protein ZapD -
  LAD35_RS17155 (LAD35_17155) - 3713472..3713684 (+) 213 WP_396022756.1 DNA gyrase inhibitor YacG -
  LAD35_RS17160 (LAD35_17160) - 3713869..3714348 (-) 480 WP_224150176.1 NUDIX domain-containing protein -
  LAD35_RS17165 (LAD35_17165) - 3714367..3715263 (-) 897 WP_224152758.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44451.14 Da        Isoelectric Point: 9.6873

>NTDB_id=605962 LAD35_RS17135 WP_224150172.1 3709860..3711080(+) (pilC) [Comamonas odontotermitis strain WLL]
MATTVNKKTSNEAVYEWEGKDRNGKIVRGETRAGGENQVVASLRRQGILPSKIKKRRMRSGKKIKPKDIALFTRQLATMM
KAGVPLLQAFDIVGRGSTNASVTKLLNDIRSDVESGSSLSTAFRRHPMQFNALYCNLVEAGEAAGILESLLDRLATYMEK
TEAIKSKIRSALMYPAAVIIVAFVVVTIIMIFVIPSFKEVFTSFGADLPGPTLIVMGISDFFVKYWYLIFFGIGGAVYFF
LQAWRRSEKMQRFMDRWLLRIPIFGPLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVFAVATEKIQQEVSTG
TSLTVAMADANVFPSMVIQMCAIGEESGSIDHMLGKAADFYEAEVDEAVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=605962 LAD35_RS17135 WP_224150172.1 3709860..3711080(+) (pilC) [Comamonas odontotermitis strain WLL]
ATGGCAACAACCGTCAACAAGAAAACATCGAACGAAGCCGTTTACGAGTGGGAGGGTAAAGACCGCAACGGCAAGATCGT
GCGCGGCGAAACCCGCGCCGGCGGCGAGAACCAGGTAGTCGCGTCCTTGCGACGCCAGGGCATTTTGCCGTCCAAGATCA
AGAAGCGCCGCATGCGCTCGGGCAAGAAGATCAAGCCCAAGGATATTGCGCTCTTCACCCGCCAGTTGGCGACCATGATG
AAGGCAGGCGTTCCATTGCTGCAGGCCTTTGACATTGTGGGCCGTGGCAGTACCAACGCCAGCGTGACCAAGCTGCTCAA
TGACATTCGCAGCGATGTCGAATCGGGCTCGTCGCTCAGCACCGCCTTCCGCCGCCATCCGATGCAATTCAATGCCCTGT
ACTGCAACCTGGTGGAAGCTGGGGAAGCCGCCGGTATTCTGGAAAGCTTGCTAGATCGCCTGGCCACCTACATGGAAAAG
ACCGAGGCGATCAAGAGCAAGATCCGCTCGGCGCTCATGTACCCAGCGGCAGTGATCATTGTTGCTTTCGTGGTGGTTAC
CATCATCATGATCTTCGTGATCCCTTCCTTCAAAGAAGTGTTCACCTCCTTTGGCGCCGATTTGCCGGGCCCGACGCTCA
TTGTGATGGGCATCAGCGACTTTTTCGTCAAGTACTGGTATTTGATCTTCTTTGGCATTGGCGGTGCCGTGTACTTCTTT
CTTCAGGCCTGGAGGCGCAGCGAAAAAATGCAGCGTTTCATGGACCGCTGGCTGCTTCGCATCCCTATTTTTGGCCCATT
GATTGAAAAGTCCTGCGTAGCCCGCTGGACCCGTACGCTGTCGACCATGTTTGCGGCAGGTGTTCCGCTGGTGGAAGCCC
TGGACTCCGTGGGCGGCGCCTCCGGCAACTCGGTATTTGCTGTCGCCACCGAAAAGATCCAGCAGGAAGTCTCCACGGGT
ACCAGTCTGACCGTGGCCATGGCCGATGCCAATGTGTTTCCATCAATGGTCATCCAGATGTGTGCCATTGGTGAGGAGTC
CGGCTCCATCGACCATATGCTGGGCAAGGCTGCGGACTTCTACGAAGCCGAGGTGGACGAGGCCGTTGCCGGCCTGTCCA
GCCTGATGGAGCCCATCATCATCGTGTTCCTGGGCACCATCATCGGCGGCATCGTGGTATCCATGTATCTGCCCATCTTC
AAGCTCGGCCAGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.854

99.261

0.525
  pilG Neisseria gonorrhoeae MS11

52.645

97.783

0.515
  pilG Neisseria meningitidis 44/76-A

52.141

97.783

0.51
  pilC Acinetobacter baylyi ADP1

49.136

99.754

0.49
  pilC Legionella pneumophila strain ERS1305867

48.522

100

0.485
  pilC Acinetobacter baumannii D1279779

47.16

99.754

0.47
  pilC Vibrio cholerae strain A1552

41.562

97.783

0.406
  pilC Thermus thermophilus HB27

38.186

100

0.394
  pilC Vibrio campbellii strain DS40M4

39.141

97.537

0.382