Detailed information NTG0605963

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LAD35_RS17140
• Genome accession: NZ_CP083451
• Coordinates: 3711083..3711946 (+)
• Length: 287 a.a.
• NCBI ID: WP_224150173.1
• Uniprot ID: -
• Organism: Comamonas odontotermitis strain WLL
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3706083..3716946

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAD35_RS17115 (LAD35_17115)	rpmA	3706142..3706402 (-)	261	WP_184707125.1	50S ribosomal protein L27	-
LAD35_RS17120 (LAD35_17120)	rplU	3706432..3706743 (-)	312	WP_184707123.1	50S ribosomal protein L21	-
LAD35_RS17125 (LAD35_17125)	-	3707012..3707941 (+)	930	WP_224152754.1	polyprenyl synthetase family protein	-
LAD35_RS17130 (LAD35_17130)	pilB	3708103..3709839 (+)	1737	WP_224150171.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LAD35_RS17135 (LAD35_17135)	pilC	3709860..3711080 (+)	1221	WP_224150172.1	type II secretion system F family protein	Machinery gene
LAD35_RS17140 (LAD35_17140)	pilD	3711083..3711946 (+)	864	WP_224150173.1	A24 family peptidase	Machinery gene
LAD35_RS17145 (LAD35_17145)	coaE	3711965..3712588 (+)	624	WP_224150174.1	dephospho-CoA kinase	-
LAD35_RS17150 (LAD35_17150)	zapD	3712598..3713353 (+)	756	WP_224150175.1	cell division protein ZapD	-
LAD35_RS17155 (LAD35_17155)	-	3713472..3713684 (+)	213	WP_396022756.1	DNA gyrase inhibitor YacG	-
LAD35_RS17160 (LAD35_17160)	-	3713869..3714348 (-)	480	WP_224150176.1	NUDIX domain-containing protein	-
LAD35_RS17165 (LAD35_17165)	-	3714367..3715263 (-)	897	WP_224152758.1	ATP-binding protein	-
LAD35_RS17170 (LAD35_17170)	argJ	3715528..3716757 (-)	1230	WP_224150177.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31478.14 Da
• Isoelectric Point: 7.2392

>NTDB_id=605963 LAD35_RS17140 WP_224150173.1 3711083..3711946(+) (pilD) [Comamonas odontotermitis strain WLL]
MSESSLYVALFALLGLLVGSFLNVVIHRLPMMLERHWKQDAQALLAGDAEAPGVEGEVKADRFNLCTPASRCPHCQHQIR
WFENIPIVSWLFLRGKCSQCKTGISVRYPLVELANGLLWAYCIHRWGLTATGAAWCFFSSMLLTAALIDWDTTLLPDDLT
LPLLWAGLLCSALGWIPVPIKDSLFGAAAGYLSLWSIYWAFKLLTGKEGMGYGDFKLLAALGAWFGWQALIPIALFSSVV
GAVIGIGLKVFSSLREGGYMPFGPFLAGAGFLVMWFGTGIIDRLLQP

Nucleotide

• Length: 864 bp

>NTDB_id=605963 LAD35_RS17140 WP_224150173.1 3711083..3711946(+) (pilD) [Comamonas odontotermitis strain WLL]
GTGTCGGAAAGTTCCTTGTATGTGGCCTTGTTTGCGCTGCTGGGTTTGCTGGTCGGCAGTTTTTTGAATGTGGTGATCCA
CCGCCTACCGATGATGCTGGAGCGGCATTGGAAGCAGGACGCTCAGGCCCTTTTGGCGGGAGACGCAGAGGCCCCCGGCG
TGGAAGGCGAAGTAAAGGCTGACCGCTTCAATCTCTGCACCCCTGCTTCGCGCTGTCCGCATTGCCAGCACCAGATCCGC
TGGTTCGAGAATATTCCCATCGTCAGCTGGCTGTTCCTGCGCGGCAAATGCAGCCAGTGCAAAACAGGCATCTCCGTGCG
CTACCCCTTGGTGGAATTGGCCAATGGACTGCTGTGGGCCTACTGCATTCATCGCTGGGGGCTGACTGCCACTGGCGCAG
CCTGGTGTTTTTTCTCGTCCATGCTGCTCACCGCAGCCCTGATCGACTGGGACACGACCCTGCTGCCAGACGACCTGACT
CTGCCGCTGCTGTGGGCCGGACTGCTGTGCAGCGCGCTGGGCTGGATTCCGGTACCCATCAAGGATTCGCTTTTTGGGGC
CGCCGCAGGTTATCTGTCGCTGTGGAGCATCTATTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGTATGGCG
ACTTCAAGCTGCTGGCCGCATTGGGCGCCTGGTTTGGCTGGCAGGCGCTCATTCCAATTGCGTTGTTCTCTTCCGTAGTG
GGCGCGGTGATTGGAATCGGCCTCAAGGTCTTTTCCAGCCTGCGTGAAGGCGGCTATATGCCGTTTGGCCCCTTCCTGGC
AGGTGCTGGCTTCTTGGTGATGTGGTTTGGCACCGGCATCATTGACCGCCTGCTGCAGCCCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.33	97.213	0.509
pilD	Vibrio campbellii strain DS40M4	48.387	97.213	0.47
pilD	Acinetobacter baumannii D1279779	44.643	97.561	0.436
pilD	Acinetobacter nosocomialis M2	43.929	97.561	0.429
pilD	Neisseria gonorrhoeae MS11	45.556	94.077	0.429