Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HK81_RS09065 | Genome accession | NC_021848 |
| Coordinates | 225294..225698 (-) | Length | 134 a.a. |
| NCBI ID | WP_015297250.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus O1:K33 str. CDC_K4557 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 220294..230698
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK81_RS09045 (M636_09320) | coaE | 220813..221427 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| HK81_RS09050 (M636_09325) | pilD | 221428..222297 (-) | 870 | WP_020835396.1 | A24 family peptidase | Machinery gene |
| HK81_RS09055 (M636_09330) | pilC | 222362..223585 (-) | 1224 | WP_020835397.1 | type II secretion system F family protein | Machinery gene |
| HK81_RS09060 (M636_09335) | pilB | 223609..225294 (-) | 1686 | WP_020835398.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HK81_RS09065 (M636_09340) | pilA | 225294..225698 (-) | 405 | WP_015297250.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| HK81_RS09070 (M636_09345) | nadC | 225962..226849 (-) | 888 | WP_005484834.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HK81_RS09075 (M636_09350) | ampD | 226942..227493 (+) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| HK81_RS09080 (M636_09355) | pdhR | 227899..228666 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13659.55 Da Isoelectric Point: 6.4433
>NTDB_id=60565 HK81_RS09065 WP_015297250.1 225294..225698(-) (pilA) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=60565 HK81_RS09065 WP_015297250.1 225294..225698(-) (pilA) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.143 |
100 |
0.545 |
| pilA | Pseudomonas aeruginosa PAK |
42.446 |
100 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae C6706 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.029 |
100 |
0.433 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.188 |
95.522 |
0.403 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.535 |
96.269 |
0.381 |