Detailed information NTG0060562

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HK81_RS09050
• Genome accession: NC_021848
• Coordinates: 221428..222297 (-)
• Length: 289 a.a.
• NCBI ID: WP_020835396.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus O1:K33 str. CDC_K4557
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 216428..227297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK81_RS09015 (M636_09290)	rpsP	217409..217657 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
HK81_RS09020 (M636_09295)	rimM	217686..218234 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
HK81_RS09025 (M636_09300)	trmD	218262..219005 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
HK81_RS09030 (M636_09305)	rplS	219047..219400 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
HK81_RS09035 (M636_09310)	yacG	219782..219976 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
HK81_RS09040 (M636_09315)	zapD	220045..220785 (-)	741	WP_015297254.1	cell division protein ZapD	-
HK81_RS09045 (M636_09320)	coaE	220813..221427 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
HK81_RS09050 (M636_09325)	pilD	221428..222297 (-)	870	WP_020835396.1	A24 family peptidase	Machinery gene
HK81_RS09055 (M636_09330)	pilC	222362..223585 (-)	1224	WP_020835397.1	type II secretion system F family protein	Machinery gene
HK81_RS09060 (M636_09335)	pilB	223609..225294 (-)	1686	WP_020835398.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HK81_RS09065 (M636_09340)	pilA	225294..225698 (-)	405	WP_015297250.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
HK81_RS09070 (M636_09345)	nadC	225962..226849 (-)	888	WP_005484834.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32413.55 Da
• Isoelectric Point: 7.1971

>NTDB_id=60562 HK81_RS09050 WP_020835396.1 221428..222297(-) (pilD) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTVISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEITPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=60562 HK81_RS09050 WP_020835396.1 221428..222297(-) (pilD) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGTAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAACCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGGATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45