Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HK81_RS09055 Genome accession   NC_021848
Coordinates   222362..223585 (-) Length   407 a.a.
NCBI ID   WP_020835397.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:K33 str. CDC_K4557     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 217362..228585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK81_RS09015 (M636_09290) rpsP 217409..217657 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  HK81_RS09020 (M636_09295) rimM 217686..218234 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  HK81_RS09025 (M636_09300) trmD 218262..219005 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HK81_RS09030 (M636_09305) rplS 219047..219400 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  HK81_RS09035 (M636_09310) yacG 219782..219976 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  HK81_RS09040 (M636_09315) zapD 220045..220785 (-) 741 WP_015297254.1 cell division protein ZapD -
  HK81_RS09045 (M636_09320) coaE 220813..221427 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  HK81_RS09050 (M636_09325) pilD 221428..222297 (-) 870 WP_020835396.1 A24 family peptidase Machinery gene
  HK81_RS09055 (M636_09330) pilC 222362..223585 (-) 1224 WP_020835397.1 type II secretion system F family protein Machinery gene
  HK81_RS09060 (M636_09335) pilB 223609..225294 (-) 1686 WP_020835398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HK81_RS09065 (M636_09340) pilA 225294..225698 (-) 405 WP_015297250.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HK81_RS09070 (M636_09345) nadC 225962..226849 (-) 888 WP_005484834.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HK81_RS09075 (M636_09350) ampD 226942..227493 (+) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45224.39 Da        Isoelectric Point: 10.3852

>NTDB_id=60563 HK81_RS09055 WP_020835397.1 222362..223585(-) (pilC) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSETEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVCISA
RVLFKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=60563 HK81_RS09055 WP_020835397.1 222362..223585(-) (pilC) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAACCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACACCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTGT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATGTATCTCCGCG
AGAGTACTCTTTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTACTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACACTCGCTACAAGCTTTACGGCGGGCATTCCGATTCTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATAGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTTGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAGCCATTGATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.504

100

0.855
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.25

98.28

0.405
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398
  pilG Neisseria meningitidis 44/76-A

39.753

99.509

0.396

Multiple sequence alignment