Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K8B83_RS04060 Genome accession   NZ_CP082926
Coordinates   861478..862746 (-) Length   422 a.a.
NCBI ID   WP_223419198.1    Uniprot ID   -
Organism   Shewanella inventionis strain D1489     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 856478..867746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B83_RS21615 - 857260..857394 (+) 135 WP_263283581.1 hypothetical protein -
  K8B83_RS04035 (K8B83_03995) mutT 858459..858872 (-) 414 WP_223419191.1 8-oxo-dGTP diphosphatase MutT -
  K8B83_RS04040 (K8B83_04000) yacG 858894..859103 (-) 210 WP_188741183.1 DNA gyrase inhibitor YacG -
  K8B83_RS04045 (K8B83_04005) zapD 859176..859910 (-) 735 WP_223419193.1 cell division protein ZapD -
  K8B83_RS04050 (K8B83_04010) coaE 859903..860532 (-) 630 WP_223419195.1 dephospho-CoA kinase -
  K8B83_RS04055 (K8B83_04015) pilD 860529..861455 (-) 927 WP_223419196.1 A24 family peptidase Machinery gene
  K8B83_RS04060 (K8B83_04020) pilC 861478..862746 (-) 1269 WP_223419198.1 type II secretion system F family protein Machinery gene
  K8B83_RS04065 (K8B83_04025) pilB 862853..864559 (-) 1707 WP_223419200.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K8B83_RS04070 (K8B83_04030) - 864654..865082 (-) 429 WP_317846445.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K8B83_RS04075 (K8B83_04035) - 865138..865296 (+) 159 WP_223419202.1 hypothetical protein -
  K8B83_RS04080 (K8B83_04040) nadC 865996..866874 (-) 879 WP_188739664.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K8B83_RS04085 (K8B83_04045) ampD 867081..867641 (+) 561 WP_223419204.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46318.55 Da        Isoelectric Point: 10.0598

>NTDB_id=603629 K8B83_RS04060 WP_223419198.1 861478..862746(-) (pilC) [Shewanella inventionis strain D1489]
MATATAKRKSKTKKPTQKHQPKVFTFEWKGVNRDGARTSGELRGTSIAEIRTVLKSQGVTPKGVRKKSAPLFQLEKKITA
MDIAMITRQIATMLSAGVPLVTTIELLGRGHEKAKVRELLATILSDVQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIAVYREKSEQLKSKIKKAMFYPAAVVVVAIAVTALLLLFVVPQFEEIFKGFGAELPAFTQLLINVSRWLQSYW
YFFAIGIIAGVFLFVRTHRNSQSFRDIIDQLILKIPIVGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
KTALLKVRQEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDEMLNKVANIYEMEVDDAIDGLSSLIEPIMMVVIGT
VVGGLIVGMYLPIFQMGNVVGG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=603629 K8B83_RS04060 WP_223419198.1 861478..862746(-) (pilC) [Shewanella inventionis strain D1489]
ATGGCCACTGCAACAGCAAAAAGAAAATCTAAGACTAAAAAGCCAACCCAAAAACACCAACCTAAGGTATTCACCTTTGA
ATGGAAAGGGGTAAATCGTGATGGTGCTCGCACCTCTGGTGAGTTGCGTGGCACCAGTATTGCTGAAATTCGTACAGTTT
TAAAAAGCCAGGGCGTCACCCCAAAAGGCGTACGTAAAAAATCAGCGCCGCTATTTCAGTTAGAGAAAAAGATCACCGCA
ATGGACATTGCCATGATCACCCGCCAAATAGCCACTATGCTCTCTGCAGGGGTTCCATTAGTAACGACGATTGAATTGCT
CGGTCGAGGCCATGAAAAAGCCAAAGTAAGGGAGTTACTAGCGACCATTTTATCTGATGTGCAATCCGGTATTCCATTGT
CTGATGCGTTAAGACCTCATAGACGTTACTTTGATGACTTGTACGTTGACCTAGTGGCTGCTGGTGAACACTCGGGCTCA
TTAGATGCAGTATTTGACCGGATTGCTGTATATCGTGAGAAGTCTGAGCAGCTAAAATCTAAAATTAAAAAAGCCATGTT
TTACCCAGCCGCCGTTGTAGTTGTGGCCATTGCTGTTACAGCATTGTTATTGCTTTTTGTTGTGCCACAATTTGAAGAGA
TTTTTAAGGGGTTCGGCGCAGAACTTCCCGCGTTTACTCAGCTTCTTATCAATGTTTCCCGTTGGCTGCAAAGTTATTGG
TACTTTTTTGCTATTGGCATAATTGCAGGAGTTTTCTTATTTGTAAGAACGCATAGAAACTCACAATCTTTCAGAGATAT
AATCGATCAATTAATACTAAAAATCCCTATTGTTGGTGAGATTTTACACAAGGCTGCTATGGCTCGGTTTGCACGCACAT
TAGCAACCACCTTTGCTGCAGGTGTCCCCCTAATCGATGGTTTAGAATCGGCGGCAGGCGCTTCTGGTAACTATGTATAT
AAAACTGCACTACTTAAAGTCCGCCAGGAGGTGATGTCGGGTATGCAAATGAACGTGGCAATGCGTACAACAGGTTTATT
CCCAGACATGCTCATTCAAATGGTGATGATTGGTGAAGAATCGGGCGGCCTAGATGAAATGCTTAATAAAGTTGCCAATA
TTTATGAAATGGAAGTTGATGATGCTATTGATGGTTTATCGAGCTTAATAGAACCGATTATGATGGTGGTGATTGGTACG
GTAGTAGGCGGTTTGATTGTCGGCATGTACTTACCTATTTTCCAAATGGGTAATGTTGTTGGCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.177

93.602

0.507
  pilC Acinetobacter baylyi ADP1

51.889

94.076

0.488
  pilC Acinetobacter baumannii D1279779

50.754

94.313

0.479
  pilC Legionella pneumophila strain ERS1305867

49.507

96.209

0.476
  pilC Vibrio cholerae strain A1552

48.744

94.313

0.46
  pilC Vibrio campbellii strain DS40M4

44.527

95.261

0.424
  pilG Neisseria meningitidis 44/76-A

41.439

95.498

0.396
  pilG Neisseria gonorrhoeae MS11

41.542

95.261

0.396