Detailed information NTG0603628

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K8B83_RS04055
• Genome accession: NZ_CP082926
• Coordinates: 860529..861455 (-)
• Length: 308 a.a.
• NCBI ID: WP_223419196.1
• Uniprot ID: -
• Organism: Shewanella inventionis strain D1489
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 855529..866455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K8B83_RS21615	-	857260..857394 (+)	135	WP_263283581.1	hypothetical protein	-
K8B83_RS04035 (K8B83_03995)	mutT	858459..858872 (-)	414	WP_223419191.1	8-oxo-dGTP diphosphatase MutT	-
K8B83_RS04040 (K8B83_04000)	yacG	858894..859103 (-)	210	WP_188741183.1	DNA gyrase inhibitor YacG	-
K8B83_RS04045 (K8B83_04005)	zapD	859176..859910 (-)	735	WP_223419193.1	cell division protein ZapD	-
K8B83_RS04050 (K8B83_04010)	coaE	859903..860532 (-)	630	WP_223419195.1	dephospho-CoA kinase	-
K8B83_RS04055 (K8B83_04015)	pilD	860529..861455 (-)	927	WP_223419196.1	A24 family peptidase	Machinery gene
K8B83_RS04060 (K8B83_04020)	pilC	861478..862746 (-)	1269	WP_223419198.1	type II secretion system F family protein	Machinery gene
K8B83_RS04065 (K8B83_04025)	pilB	862853..864559 (-)	1707	WP_223419200.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K8B83_RS04070 (K8B83_04030)	-	864654..865082 (-)	429	WP_317846445.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
K8B83_RS04075 (K8B83_04035)	-	865138..865296 (+)	159	WP_223419202.1	hypothetical protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34440.83 Da
• Isoelectric Point: 8.3033

>NTDB_id=603628 K8B83_RS04055 WP_223419196.1 860529..861455(-) (pilD) [Shewanella inventionis strain D1489]
MTEFISTFITTMTQYPWAFVAISFIFAATIGSFLNVVIHRLPVMMKREWQSECNYYLNEYHPDIVKQVGNERLNKPIDEY
PAKYNLVVPGSACPKCKSNIKPWHNVPVIGWLSLKGKCANCKTPISARYPTIELLTGIFIATLAWHFGPTWQFVYASILT
FVLVALTGIDLDEMLLPDQLTLPILWLGLIINLNGIYTSPQDAIIGAAAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAV
FGAWLGWQMLPLIILLSSLVGAVVGILMIITKKLNKGNPIPFGPYIAAAGWIALVWGQDILNWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=603628 K8B83_RS04055 WP_223419196.1 860529..861455(-) (pilD) [Shewanella inventionis strain D1489]
ATGACTGAATTCATATCAACCTTTATCACCACCATGACCCAATACCCCTGGGCCTTTGTGGCGATTAGTTTTATTTTTGC
TGCCACCATTGGCAGTTTTCTTAATGTAGTGATCCATCGCTTACCAGTGATGATGAAGCGTGAATGGCAAAGCGAATGTA
ATTACTATTTAAACGAATATCACCCTGATATTGTTAAGCAAGTAGGTAATGAACGTTTAAATAAACCCATTGATGAGTAT
CCGGCAAAGTACAATCTTGTGGTACCGGGTTCTGCCTGCCCAAAATGCAAAAGTAATATTAAACCCTGGCATAATGTGCC
TGTTATTGGCTGGTTGTCACTCAAAGGCAAATGCGCCAATTGTAAAACACCAATTTCAGCGCGCTATCCTACTATCGAAT
TATTAACGGGGATTTTCATTGCCACCCTGGCCTGGCATTTTGGCCCGACATGGCAGTTTGTTTATGCCAGCATATTAACC
TTTGTGTTAGTGGCGTTAACCGGCATTGATTTAGATGAAATGCTGCTGCCTGATCAACTCACCTTACCAATATTGTGGTT
AGGATTAATCATCAACCTTAACGGTATATATACCAGCCCACAAGATGCCATTATTGGTGCAGCTGCTGGTTATTTAAGTT
TATGGTCAGTGTTTTGGTTATTCAAACTCGTTACTGGCAAAGAAGGGATGGGCTATGGCGACTTTAAGTTATTAGCCGTA
TTTGGTGCCTGGCTCGGTTGGCAAATGTTGCCACTAATAATATTACTATCATCACTTGTTGGTGCAGTGGTCGGTATTTT
AATGATCATCACTAAAAAGCTTAACAAGGGCAACCCAATCCCCTTTGGCCCCTACATAGCCGCAGCTGGTTGGATAGCAT
TAGTCTGGGGGCAAGATATTCTTAACTGGTATTTGAGCACCTTATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.22	95.779	0.51
pilD	Acinetobacter baumannii D1279779	50.327	99.351	0.5
pilD	Acinetobacter nosocomialis M2	49.508	99.026	0.49
pilD	Vibrio cholerae strain A1552	50.508	95.779	0.484
pilD	Neisseria gonorrhoeae MS11	44.33	94.481	0.419