Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NI387_RS15775 Genome accession   NZ_CP099921
Coordinates   3372326..3373438 (-) Length   370 a.a.
NCBI ID   WP_140391726.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM25     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3367326..3378438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI387_RS15745 (NI387_16045) hemF 3367787..3368704 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  NI387_RS15750 (NI387_16050) - 3368752..3369309 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  NI387_RS15755 (NI387_16055) purE 3369509..3369994 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NI387_RS15760 (NI387_16060) - 3369999..3371132 (+) 1134 WP_042770039.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NI387_RS15765 (NI387_16065) - 3371196..3371765 (-) 570 WP_005461441.1 type I DNA topoisomerase -
  NI387_RS15770 (NI387_16070) - 3371844..3372323 (-) 480 WP_005461440.1 DUF494 family protein -
  NI387_RS15775 (NI387_16075) dprA 3372326..3373438 (-) 1113 WP_140391726.1 DNA-processing protein DprA Machinery gene
  NI387_RS15780 (NI387_16080) - 3373422..3374516 (-) 1095 WP_025636856.1 LysM peptidoglycan-binding domain-containing protein -
  NI387_RS15785 (NI387_16085) def 3374655..3375173 (+) 519 WP_005461416.1 peptide deformylase -
  NI387_RS15790 (NI387_16090) fmt 3375207..3376153 (+) 947 Protein_2988 methionyl-tRNA formyltransferase -
  NI387_RS15795 (NI387_16095) rsmB 3376234..3377517 (+) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39826.44 Da        Isoelectric Point: 6.2334

>NTDB_id=603471 NI387_RS15775 WP_140391726.1 3372326..3373438(-) (dprA) [Vibrio parahaemolyticus strain BM25]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQLVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=603471 NI387_RS15775 WP_140391726.1 3372326..3373438(-) (dprA) [Vibrio parahaemolyticus strain BM25]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCTAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (WHD_DprA)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

58.919

100

0.589
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.453

100

0.478
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373