Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K8O89_RS17845 Genome accession   NZ_CP082852
Coordinates   4013430..4014650 (-) Length   406 a.a.
NCBI ID   WP_019232346.1    Uniprot ID   A0AAX0WUZ4
Organism   Legionella anisa strain FDAARGOS_1480     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4008430..4019650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O89_RS17820 (K8O89_17785) - 4008544..4008993 (-) 450 WP_019232351.1 CBS domain-containing protein -
  K8O89_RS17825 (K8O89_17790) - 4009193..4010404 (-) 1212 WP_019232350.1 sterol desaturase family protein -
  K8O89_RS17830 (K8O89_17795) - 4010537..4011721 (-) 1185 WP_019232349.1 aminotransferase class V-fold PLP-dependent enzyme -
  K8O89_RS17835 (K8O89_17800) - 4011751..4012518 (-) 768 WP_019232348.1 HAD family hydrolase -
  K8O89_RS17840 (K8O89_17805) - 4012540..4013400 (-) 861 WP_019232347.1 A24 family peptidase -
  K8O89_RS17845 (K8O89_17810) pilC 4013430..4014650 (-) 1221 WP_019232346.1 type II secretion system F family protein Machinery gene
  K8O89_RS17850 (K8O89_17815) pilB 4014662..4016380 (-) 1719 WP_019232345.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K8O89_RS17855 (K8O89_17820) - 4016621..4017412 (+) 792 WP_019232344.1 methyltransferase domain-containing protein -
  K8O89_RS17860 (K8O89_17825) - 4017463..4017822 (-) 360 WP_136344279.1 hypothetical protein -
  K8O89_RS17865 (K8O89_17830) - 4017926..4018507 (-) 582 WP_019232342.1 hypothetical protein -
  K8O89_RS17870 (K8O89_17835) - 4018677..4019012 (+) 336 WP_040522024.1 DUF1820 family protein -
  K8O89_RS17875 (K8O89_17840) - 4019050..4019610 (+) 561 WP_019232340.1 hypoxanthine-guanine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44447.45 Da        Isoelectric Point: 9.9290

>NTDB_id=603067 K8O89_RS17845 WP_019232346.1 4013430..4014650(-) (pilC) [Legionella anisa strain FDAARGOS_1480]
MKKNANTTLTFHYTGVNKAAQKINGDIEARSLALAKVELRRQGIIVNKIAKKRAPVFSLKNKKVKSGDITVFSRQLATMI
ESGIPLVQSFDIVAKGQSNKRLKELIENIKNDVETGLTLSEALKKHPAHFNELFCNLVDAGEKSGSLDIMLDKIATYKEK
IETIKKKIKKALTYPMAVLVVAFIVTTGLLMFVVPQFEALFKGFGAELPAMTQAVVSMSKFFQSYWYLIFGVLIGGIYAF
IYALKHSPQFAQTVDRTLLKLPVIGPIIEKAAIARFARTLSITFAAGLPLVEALKSVAGATGNIIFAQSTDTIREEVSTG
QQMNKAMENTQLFPNMVIQMVAIGEESGALEKMLSKVADFYEEDVDNAVDSLSSLLEPIIMSILGILVGGLVVAMYLPIF
KLGTAI

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=603067 K8O89_RS17845 WP_019232346.1 4013430..4014650(-) (pilC) [Legionella anisa strain FDAARGOS_1480]
ATGAAAAAAAATGCCAATACCACCTTAACCTTTCATTACACAGGCGTTAATAAAGCAGCCCAAAAAATAAATGGAGATAT
TGAGGCCAGAAGTCTTGCTTTAGCTAAAGTAGAGTTGCGCAGACAAGGAATTATCGTTAATAAAATTGCTAAAAAACGTG
CACCTGTTTTCAGTTTAAAAAATAAAAAAGTAAAGTCTGGAGATATTACGGTATTTAGTCGTCAATTAGCGACAATGATT
GAATCAGGGATACCTTTAGTGCAATCCTTTGATATCGTTGCAAAAGGACAATCCAATAAACGGCTTAAAGAATTAATTGA
AAATATTAAAAATGATGTTGAAACAGGATTAACGCTTTCTGAGGCGCTGAAGAAACATCCTGCCCATTTTAACGAGTTAT
TCTGCAATTTAGTGGATGCTGGCGAAAAATCCGGCTCTCTTGATATCATGTTGGATAAAATCGCTACTTATAAAGAAAAA
ATAGAAACGATAAAAAAGAAAATTAAAAAAGCGTTAACCTATCCAATGGCTGTATTGGTTGTTGCTTTTATTGTTACGAC
TGGCTTGCTTATGTTCGTTGTCCCTCAATTCGAGGCTTTATTTAAGGGTTTTGGCGCAGAATTGCCTGCTATGACCCAAG
CAGTTGTGAGTATGTCTAAATTCTTCCAATCCTATTGGTATTTAATTTTTGGAGTTTTGATTGGTGGTATATATGCATTT
ATTTATGCACTAAAACACTCACCTCAATTTGCGCAAACTGTAGATAGAACATTGTTAAAACTCCCTGTAATAGGTCCTAT
TATTGAGAAGGCTGCAATCGCTCGCTTTGCAAGGACGCTATCGATTACTTTTGCTGCTGGCTTGCCTCTCGTTGAAGCAC
TTAAATCTGTAGCAGGTGCTACAGGAAACATTATTTTCGCTCAATCCACTGACACAATTAGGGAAGAGGTATCTACAGGC
CAACAAATGAATAAGGCGATGGAGAATACCCAATTATTTCCAAATATGGTGATCCAGATGGTCGCTATTGGTGAGGAATC
AGGTGCATTAGAGAAAATGTTAAGTAAGGTTGCTGATTTTTATGAAGAAGATGTTGATAATGCAGTTGACTCACTCAGCA
GCTTATTAGAACCTATTATTATGAGTATTTTAGGTATCTTGGTAGGCGGTCTGGTGGTTGCAATGTATTTGCCTATCTTT
AAACTGGGAACTGCAATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

79.803

100

0.798
  pilC Acinetobacter baumannii D1279779

53.58

99.754

0.534
  pilC Acinetobacter baylyi ADP1

54.156

97.783

0.53
  pilC Pseudomonas stutzeri DSM 10701

51.232

100

0.512
  pilG Neisseria meningitidis 44/76-A

44.552

100

0.453
  pilG Neisseria gonorrhoeae MS11

44.31

100

0.451
  pilC Vibrio cholerae strain A1552

42.347

96.552

0.409
  pilC Vibrio campbellii strain DS40M4

38.499

100

0.392
  pilC Thermus thermophilus HB27

36.691

100

0.377