Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K6750_RS02840 Genome accession   NZ_CP082313
Coordinates   583674..584897 (-) Length   407 a.a.
NCBI ID   WP_238966838.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZZV2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578674..589897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6750_RS02810 (K6750_02810) trmD 579193..579954 (+) 762 WP_005385420.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  K6750_RS02815 (K6750_02815) rplS 579996..580349 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  K6750_RS02820 (K6750_02820) yacG 581004..581198 (-) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  K6750_RS02825 (K6750_02825) zapD 581357..582097 (-) 741 WP_042521326.1 cell division protein ZapD -
  K6750_RS02830 (K6750_02830) coaE 582125..582739 (-) 615 WP_017635920.1 dephospho-CoA kinase -
  K6750_RS02835 (K6750_02835) pilD 582740..583609 (-) 870 WP_017635919.1 A24 family peptidase Machinery gene
  K6750_RS02840 (K6750_02840) pilC 583674..584897 (-) 1224 WP_238966838.1 type II secretion system F family protein Machinery gene
  K6750_RS02845 (K6750_02845) pilB 584921..586606 (-) 1686 WP_132936924.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K6750_RS02850 (K6750_02850) - 586609..587094 (-) 486 WP_025768185.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K6750_RS02855 (K6750_02855) nadC 587357..588244 (-) 888 WP_047102656.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K6750_RS02860 (K6750_02860) ampD 588337..588888 (+) 552 WP_213899256.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45301.44 Da        Isoelectric Point: 10.3992

>NTDB_id=601281 K6750_RS02840 WP_238966838.1 583674..584897(-) (pilC) [Vibrio alginolyticus strain ZZV2]
MKSTTPQLKNFRWKGTNSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=601281 K6750_RS02840 WP_238966838.1 583674..584897(-) (pilC) [Vibrio alginolyticus strain ZZV2]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCACCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGTCAGATTTCGACGATGTTG
ATAACTGGTGTGCCCTTAGTTCAGGCTTTAAAATTGGTCTCAGAAAATCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGTACGCCTATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCAACAGGTGAGCAATCCGGTAACTTAGCGGAAGTATTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAGCAGCTTCGTGCGAAAGTGATTAAAGCACTGATTTACCCAGCTATGGTAGTGCTCGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCTTGGTTTACCAGGC
AAGTATTAGATCTTTCCGCATGGACACAAAACTGGAGTCCATTTATAGCACTAGGCTCTATCAGTCTATTCATCTCGGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAATCGCTCTGTGCTTAAATTTCCTGTCCTCGGGCCCGT
ATTATCAAAAGCAGCGATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGCATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAACTGTAATGTGTTCCCTGAATTAGTGTTACAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACGACATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGATAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCACTAATTATCGTTTTTTTAGGTATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.978

100

0.87
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Legionella pneumophila strain ERS1305867

40.049

100

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398