Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | K6749_RS04380 | Genome accession | NZ_CP082310 |
| Coordinates | 943275..943559 (+) | Length | 94 a.a. |
| NCBI ID | WP_238970370.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain HYV1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 938275..948559
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6749_RS04370 (K6749_04360) | - | 940686..940958 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| K6749_RS04375 (K6749_04365) | ppiD | 941160..943019 (+) | 1860 | WP_005382334.1 | peptidylprolyl isomerase | - |
| K6749_RS04380 (K6749_04370) | comEA | 943275..943559 (+) | 285 | WP_238970370.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| K6749_RS04385 (K6749_04375) | rrtA | 943658..944209 (-) | 552 | WP_238970236.1 | rhombosortase | - |
| K6749_RS04390 (K6749_04380) | - | 944213..944827 (+) | 615 | WP_054575199.1 | DTW domain-containing protein | - |
| K6749_RS04395 (K6749_04385) | - | 944834..946156 (-) | 1323 | WP_062730722.1 | anti-phage deoxyguanosine triphosphatase | - |
| K6749_RS04400 (K6749_04390) | yfbR | 946172..946756 (-) | 585 | WP_062730721.1 | 5'-deoxynucleotidase | - |
| K6749_RS04405 (K6749_04395) | - | 946847..948061 (-) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10339.98 Da Isoelectric Point: 4.8227
>NTDB_id=601224 K6749_RS04380 WP_238970370.1 943275..943559(+) (comEA) [Vibrio alginolyticus strain HYV1]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEMKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEMKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=601224 K6749_RS04380 WP_238970370.1 943275..943559(+) (comEA) [Vibrio alginolyticus strain HYV1]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGATGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGATGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
87.234 |
100 |
0.872 |
| comEA | Vibrio campbellii strain DS40M4 |
74.737 |
100 |
0.755 |
| comEA | Vibrio cholerae C6706 |
59.783 |
97.872 |
0.585 |
| comEA | Vibrio cholerae strain A1552 |
59.783 |
97.872 |
0.585 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
49.383 |
86.17 |
0.426 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
58.065 |
65.957 |
0.383 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA | Legionella pneumophila strain ERS1305867 |
35.789 |
100 |
0.362 |
| comEA | Legionella pneumophila str. Paris |
35.789 |
100 |
0.362 |