Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M5C73_RS04665 Genome accession   NZ_CP098790
Coordinates   956490..958157 (+) Length   555 a.a.
NCBI ID   WP_017864362.1    Uniprot ID   -
Organism   Lactococcus lactis strain WiKim0124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951490..963157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C73_RS04640 (M5C73_04640) - 952547..952786 (+) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -
  M5C73_RS04645 (M5C73_04645) - 952935..954092 (+) 1158 WP_033899223.1 glycerate kinase -
  M5C73_RS04650 (M5C73_04650) - 954174..955031 (+) 858 WP_012897509.1 polyprenyl synthetase family protein -
  M5C73_RS04655 (M5C73_04655) - 955110..955916 (+) 807 WP_015426159.1 TlyA family RNA methyltransferase -
  M5C73_RS04660 (M5C73_04660) - 955913..956359 (+) 447 WP_015426160.1 transcription regulator -
  M5C73_RS04665 (M5C73_04665) recN 956490..958157 (+) 1668 WP_017864362.1 DNA repair protein RecN Machinery gene
  M5C73_RS04670 (M5C73_04670) - 958882..959448 (+) 567 WP_003131353.1 TMEM175 family protein -
  M5C73_RS04675 (M5C73_04675) - 959546..960067 (+) 522 WP_003131354.1 DUF805 domain-containing protein -
  M5C73_RS04680 (M5C73_04680) - 960091..961029 (+) 939 WP_195228460.1 DUF805 domain-containing protein -
  M5C73_RS04685 (M5C73_04685) rsmH 961249..962202 (+) 954 WP_010905597.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  M5C73_RS04690 (M5C73_04690) - 962360..962740 (+) 381 WP_003131357.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62810.02 Da        Isoelectric Point: 4.6475

>NTDB_id=601143 M5C73_RS04665 WP_017864362.1 956490..958157(+) (recN) [Lactococcus lactis strain WiKim0124]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKAVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKN
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLINRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENSVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=601143 M5C73_RS04665 WP_017864362.1 956490..958157(+) (recN) [Lactococcus lactis strain WiKim0124]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGGCGTGCTTCGAGTGATT
TTGTGCGACATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGGCGGTATTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGCCTTTGATCAGATAAAAAAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATTCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAA
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAACTTTGATAATGACTA
CCAAGAGCTTGCTGACAAGACAGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCTGAACTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCAGAAAATGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCCAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAATTTTCAGCAAACGGGAATGAGCATGTTGAATTCTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCGCTGGCAAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCTATAAAATCAAGCTTTTCAAGACGTGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTCGATACTGGTGTTTCTGGCCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCTAGACATGGGCAAGTTCTTGCAATTTCTCACCTTCCGCAAGTTGTGGCCATTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.182

100

0.445