Detailed information NTG0601144

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K6745_RS12535
• Genome accession: NZ_CP082303
• Coordinates: 2722035..2722904 (+)
• Length: 289 a.a.
• NCBI ID: WP_025768182.1
• Uniprot ID: A0AA36UQF6
• Organism: Vibrio alginolyticus strain FJV2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2717035..2727904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6745_RS12515 (K6745_12430)	nadC	2717400..2718287 (+)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-
K6745_RS12520 (K6745_12435)	-	2718550..2719035 (+)	486	WP_025768185.1	pilin	-
K6745_RS12525 (K6745_12440)	pilB	2719038..2720723 (+)	1686	WP_025768184.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K6745_RS12530 (K6745_12445)	pilC	2720747..2721970 (+)	1224	WP_025768183.1	type II secretion system F family protein	Machinery gene
K6745_RS12535 (K6745_12450)	pilD	2722035..2722904 (+)	870	WP_025768182.1	prepilin peptidase	Machinery gene
K6745_RS12540 (K6745_12455)	coaE	2722905..2723519 (+)	615	WP_017635920.1	dephospho-CoA kinase	-
K6745_RS12545 (K6745_12460)	zapD	2723547..2724287 (+)	741	WP_005373086.1	cell division protein ZapD	-
K6745_RS12550 (K6745_12465)	yacG	2724446..2724640 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
K6745_RS12555 (K6745_12470)	rplS	2724953..2725306 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
K6745_RS12560 (K6745_12475)	trmD	2725348..2726109 (-)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K6745_RS12565 (K6745_12480)	rimM	2726137..2726685 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
K6745_RS12570 (K6745_12485)	rpsP	2726715..2726963 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32597.78 Da
• Isoelectric Point: 7.0197

>NTDB_id=601144 K6745_RS12535 WP_025768182.1 2722035..2722904(+) (pilD) [Vibrio alginolyticus strain FJV2]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=601144 K6745_RS12535 WP_025768182.1 2722035..2722904(+) (pilD) [Vibrio alginolyticus strain FJV2]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCACTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46