Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   M5C73_RS04540 Genome accession   NZ_CP098790
Coordinates   932677..932982 (+) Length   101 a.a.
NCBI ID   WP_052062168.1    Uniprot ID   -
Organism   Lactococcus lactis strain WiKim0124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 927677..937982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C73_RS04530 (M5C73_04530) - 929117..929431 (+) 315 WP_058204881.1 helix-turn-helix transcriptional regulator -
  M5C73_RS04535 (M5C73_04535) glf 929570..930706 (+) 1137 WP_058204882.1 UDP-galactopyranose mutase -
  M5C73_RS04540 (M5C73_04540) ssbB 932677..932982 (+) 306 WP_052062168.1 single-stranded DNA-binding protein Machinery gene
  M5C73_RS04545 (M5C73_04545) - 932949..933116 (+) 168 WP_165379823.1 hypothetical protein -
  M5C73_RS04550 (M5C73_04550) - 933765..934127 (-) 363 WP_033900923.1 hypothetical protein -
  M5C73_RS04555 (M5C73_04555) - 934198..934443 (-) 246 WP_129881529.1 hypothetical protein -
  M5C73_RS04560 (M5C73_04560) pepV 934919..936337 (+) 1419 WP_017864349.1 dipeptidase PepV -
  M5C73_RS04565 (M5C73_04565) acpS 936440..936799 (+) 360 WP_017864350.1 holo-ACP synthase -
  M5C73_RS04570 (M5C73_04570) alr 936844..937947 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11403.15 Da        Isoelectric Point: 10.1086

>NTDB_id=601142 M5C73_RS04540 WP_052062168.1 932677..932982(+) (ssbB) [Lactococcus lactis strain WiKim0124]
MNNTHQIGHLSKDLELKKKPSNKSYVHFSIVVNRKSKNANGNCEADFIPCILWGEKAETLVKYASKVNRIGIDGELRTNP
IKTLQESNGLVWKFSSIILSF

Nucleotide


Download         Length: 306 bp        

>NTDB_id=601142 M5C73_RS04540 WP_052062168.1 932677..932982(+) (ssbB) [Lactococcus lactis strain WiKim0124]
ATGAATAACACACACCAAATCGGACATTTGTCAAAAGACCTTGAACTTAAAAAGAAACCTTCTAATAAAAGCTATGTTCA
TTTTTCGATTGTGGTAAACCGTAAGTCTAAAAATGCAAATGGCAATTGTGAAGCTGACTTTATTCCATGTATTCTTTGGG
GAGAAAAAGCAGAAACACTTGTGAAATATGCTTCAAAAGTAAATAGAATTGGAATTGATGGTGAATTACGAACTAATCCT
ATAAAGACTCTTCAGGAGTCAAACGGTTTAGTATGGAAGTTCTCGTCAATAATTTTGAGTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

52.564

77.228

0.406
  ssbB/cilA Streptococcus pneumoniae Rx1

40.404

98.02

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40.404

98.02

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40.404

98.02

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

98.02

0.386
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.489

93.069

0.386
  ssbB/cilA Streptococcus mitis SK321

41.489

93.069

0.386