Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K6I41_RS17925 Genome accession   NZ_CP082274
Coordinates   3779874..3781292 (+) Length   472 a.a.
NCBI ID   WP_250374883.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3774874..3786292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS17905 (K6I41_17780) thrC 3775131..3776270 (+) 1140 WP_004795157.1 threonine synthase -
  K6I41_RS17910 (K6I41_17785) pbpG 3776377..3777423 (-) 1047 WP_147306163.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  K6I41_RS17915 (K6I41_17790) - 3777636..3778271 (+) 636 WP_003654436.1 response regulator -
  K6I41_RS17920 (K6I41_17795) pilS 3778282..3779850 (+) 1569 WP_198308288.1 PAS domain-containing sensor histidine kinase Regulator
  K6I41_RS17925 (K6I41_17800) pilR 3779874..3781292 (+) 1419 WP_250374883.1 sigma-54 dependent transcriptional regulator Regulator
  K6I41_RS17930 (K6I41_17805) - 3781295..3782479 (-) 1185 WP_151989359.1 S41 family peptidase -
  K6I41_RS17935 (K6I41_17810) gpmI 3782495..3784042 (-) 1548 WP_250374884.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  K6I41_RS17940 (K6I41_17815) lptG 3784169..3785239 (-) 1071 WP_013199135.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53003.14 Da        Isoelectric Point: 6.1582

>NTDB_id=600779 K6I41_RS17925 WP_250374883.1 3779874..3781292(+) (pilR) [Acinetobacter sp. AS23]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTGETYLLQQDFPGNVRELRNMIERAITLSDDEFIDLTHLAPLLRGSSVNSQITTQPLN
DTSNAIAQTRPKLPMEGLERYLENIEKDLLLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=600779 K6I41_RS17925 WP_250374883.1 3779874..3781292(+) (pilR) [Acinetobacter sp. AS23]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGTT
TAACCGATTTAAACCTACCCGATGGTAGCGGTTTAGAATTGGTTAAACACGTTTCTCAAACTTACCCACACACACCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCGTTAAAAGCAGGAGCTTTTGACTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTTAACCAGCCAAAACCAGAACATGAGTTTGGTGAAACAA
CTTTGGAAAATGACCTATTAATTGGTCGTTCTCCCCCAATACAAAACTTACGAACAGCTATTAAAAAAATAGCTCGTTCT
CAAGCTCCTGTGTTTGTTACAGGTGAGTCTGGTACAGGTAAAGAGGTTGTTGCTAATCTTATTCACCGCTTGAGTAATCG
CAGCGAAGGCCCGTTTATTGCGATTAACTGTGGAGCCATCCCAACTGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGAAGTTTTACTGGAGCGACCCAAGACAAACAAGGCCTTATTTTGTCTGCGCATGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCATTAAGTATGCAGGTTAAATTGCTTCGGGCAGTGCAAGAGAAAAAAATTCGTCCAGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGCGCCAGCCACCAAGATTTAGATTTGTTAGTCCGACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTGATGGATATCATGTTGCCGCCACTACGTGAGCGCGGTGGCGATATTTTGTTA
TTAGCCAATCATTTTATTCAAAAAGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACTACAACTGGTGAAACTTA
TTTATTGCAGCAAGATTTCCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATTTATTGATTTAACACATCTAGCACCTCTTCTCAGAGGCAGTAGTGTTAACTCTCAAATCACCACCCAACCATTGAAT
GACACCTCAAATGCGATTGCCCAAACTCGACCAAAACTACCAATGGAAGGTTTAGAACGCTACTTAGAAAATATTGAAAA
AGATCTTCTATTGAACGCATTGGACATGACACATTGGAACCGAACATTAGCAGCTAAAAAGCTAGGAATGACCTTTCGTT
CTTTACGCTATCGACTGAAAAAGTTTGGCTTAGATACCGAATTAGGAGAAGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.258

100

0.864
  pilR Pseudomonas aeruginosa PAK

51.31

97.034

0.498