Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   K6I41_RS18225 Genome accession   NZ_CP082274
Coordinates   3840461..3841615 (+) Length   384 a.a.
NCBI ID   WP_250374907.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3835461..3846615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS18200 (K6I41_18070) - 3835608..3836819 (+) 1212 WP_250374905.1 oxygenase MpaB family protein -
  K6I41_RS18205 (K6I41_18075) - 3836891..3837097 (-) 207 WP_199988163.1 hypothetical protein -
  K6I41_RS18210 (K6I41_18080) - 3837152..3839266 (-) 2115 WP_250374906.1 TonB-dependent copper receptor -
  K6I41_RS18215 (K6I41_18085) - 3839339..3839764 (-) 426 WP_192834811.1 DUF2946 family protein -
  K6I41_RS18220 (K6I41_18090) def 3839808..3840338 (-) 531 WP_004795267.1 peptide deformylase -
  K6I41_RS18225 (K6I41_18095) tsaP 3840461..3841615 (+) 1155 WP_250374907.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  K6I41_RS18230 (K6I41_18100) dprA 3841636..3842769 (+) 1134 WP_250374908.1 DNA-processing protein DprA Machinery gene
  K6I41_RS18235 (K6I41_18105) - 3842819..3843388 (+) 570 WP_250374909.1 Sua5/YciO/YrdC/YwlC family protein -
  K6I41_RS18240 (K6I41_18110) - 3843781..3844701 (-) 921 WP_128825334.1 DMT family transporter -
  K6I41_RS18245 (K6I41_18115) - 3844808..3845461 (-) 654 WP_250374910.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42509.44 Da        Isoelectric Point: 7.2983

>NTDB_id=600781 K6I41_RS18225 WP_250374907.1 3840461..3841615(+) (tsaP) [Acinetobacter sp. AS23]
MKKVFNGMVEFHALGIKKHLLAFALFTGVAMGTVAEVQAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLAGRPLIGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNDNVPVIPLEHIKQWLE
HSTILPADAIEHTPYVVGTADQRVLAARGQTIYARGQGLVNGQRYAVYREGEPYYFTDSKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYDSEVRRGDRVMPEEEATLPTLFYPVNATQVTDAGKIIRVMGSIGSAAKNSVVTLDRGTAQGIQVGQ
VFDITQKGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPRFDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=600781 K6I41_RS18225 WP_250374907.1 3840461..3841615(+) (tsaP) [Acinetobacter sp. AS23]
ATGAAAAAGGTTTTTAACGGCATGGTTGAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTCGCACTTTTTAC
AGGGGTTGCAATGGGTACAGTAGCAGAGGTTCAGGCTGCTAGTCCAAACCATAATCCACCCTCTCTAAAAAGTAATGCAC
CACATGTCTACGTTGTAAAACGCGGAGATACGCTGTGGGATATTTCCGGTCATTTCCTAAGTAAACCTTGGCGCTGGCCA
GAAATCTGGGCAAATAATCAACATGTCAAAAATCCACACTGGATTTATCCTGGTGACCGATTGTTGTTATGCAGTTTGGC
GGGTCGACCATTGATCGGTAAAGATGAGGGAGATGGTTGCGTTGGCATTATTCGTCGCTACACAGGCCAAATGACAAATT
TGCAACCTCAAGTTCGTGTGGAGTCACTTAACGACAATGTGCCAGTTATTCCACTTGAACATATCAAACAGTGGTTAGAA
CACAGCACAATTTTGCCAGCCGATGCAATTGAACACACTCCTTATGTAGTAGGAACTGCTGATCAACGCGTGCTTGCCGC
AAGAGGCCAAACCATTTATGCGCGTGGACAAGGTTTAGTTAATGGTCAACGTTATGCAGTCTACCGTGAAGGTGAACCTT
ATTATTTCACAGACAGTAAAGGTAAAAAGCATAGTCTAGGTATTGAACTGCAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATAACAACACTTGAGTTAACGGATAGCTACGATTCCGAAGTACGCCGTGGTGATCGGGTTATGCCGGA
AGAAGAAGCAACATTACCTACTTTATTTTATCCGGTAAACGCCACTCAAGTTACAGATGCTGGCAAGATCATTCGTGTAA
TGGGTTCAATTGGCAGCGCTGCAAAAAATAGTGTGGTGACTTTGGACCGAGGCACAGCACAAGGGATTCAAGTAGGACAA
GTTTTTGATATTACTCAAAAAGGTGAAACCATTCGAGACCCTAAAACCAAAGAACCAATACAGTTGCCTGGCCAACAGAT
TGGTAGTCTGATGGTTTTCAGAACCTTTGATCAGCTTAGCTATGCCTACGTATTAGAAAGTGACCTACCTATTAAAGTTG
GTTCAAGTATTCAGCCACCTCGTTTTGATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

88.802

100

0.888