Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   K6I41_RS18230 Genome accession   NZ_CP082274
Coordinates   3841636..3842769 (+) Length   377 a.a.
NCBI ID   WP_250374908.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3836636..3847769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS18205 (K6I41_18075) - 3836891..3837097 (-) 207 WP_199988163.1 hypothetical protein -
  K6I41_RS18210 (K6I41_18080) - 3837152..3839266 (-) 2115 WP_250374906.1 TonB-dependent copper receptor -
  K6I41_RS18215 (K6I41_18085) - 3839339..3839764 (-) 426 WP_192834811.1 DUF2946 family protein -
  K6I41_RS18220 (K6I41_18090) def 3839808..3840338 (-) 531 WP_004795267.1 peptide deformylase -
  K6I41_RS18225 (K6I41_18095) tsaP 3840461..3841615 (+) 1155 WP_250374907.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  K6I41_RS18230 (K6I41_18100) dprA 3841636..3842769 (+) 1134 WP_250374908.1 DNA-processing protein DprA Machinery gene
  K6I41_RS18235 (K6I41_18105) - 3842819..3843388 (+) 570 WP_250374909.1 Sua5/YciO/YrdC/YwlC family protein -
  K6I41_RS18240 (K6I41_18110) - 3843781..3844701 (-) 921 WP_128825334.1 DMT family transporter -
  K6I41_RS18245 (K6I41_18115) - 3844808..3845461 (-) 654 WP_250374910.1 TetR/AcrR family transcriptional regulator -
  K6I41_RS18250 (K6I41_18120) - 3845597..3846811 (+) 1215 WP_250374911.1 MFS transporter -
  K6I41_RS18255 (K6I41_18125) - 3846833..3847597 (+) 765 WP_151767487.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41979.69 Da        Isoelectric Point: 6.6823

>NTDB_id=600782 K6I41_RS18230 WP_250374908.1 3841636..3842769(+) (dprA) [Acinetobacter sp. AS23]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVNYFGSCEKAIQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLIEQI
QQYTDFILTSEDLGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSRHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEQILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEVVVSCAPEI
PEHLINLYQSLDWVGQNIDQLVIHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=600782 K6I41_RS18230 WP_250374908.1 3841636..3842769(+) (dprA) [Acinetobacter sp. AS23]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCCTTAGTTAGCTTCAA
AAAAATTGTCAATTATTTTGGTAGCTGTGAAAAGGCAATCCAACCTGCTGGGTTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAATTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGTCAGAAGACCTTGGCTATCCTACGCAATTACTACCTTATACAGACCATCCACC
CATCATATTTGGAAAAGGCCAAGCGCAAGCTTTGTTACAACCACAAATTGCGATTGTAGGTAGTCGAAAACCAAGCCGGC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGATTTTATGTAAGTAGTGGTTTGGCATATGGG
ATTGACGAAGCTGCACACCAAGGAGCTTCAGCACATCAACGTACGATTGCTGTGACAGGGACCGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACAGATCTTGGCTCAAAACGGCGCCATCATTACTGAGTTTTTGCCGGGTACGC
CACCATTACAGCAACATTTTCCTCGTAGGAACCGAATTGTCAGTGGTCTGAGTTTAGGTGTGTTAGTGGTAGAAGCTACT
TTAAAAAGTGGTTCTCTCATTACTGCGAACAAAGCTGCTGAGCAAGGTAAAACCGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAGGGTTGCCATCAACTTATTCGTGAAGGAGCCATTTTAGTTGATCATCCTGAGCAGATTATTGAAG
ATCTTGCTTTACCTACTCAATGGCAAAGTCAGCAACAAAACTCAACTGAAGAGGTCGTGGTTTCTTGTGCCCCAGAAATT
CCTGAACATTTGATTAACCTTTATCAGTCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCATACACCACTCTCA
ACCTGTGGCAGAACTCACCTCTTCACTCATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGGCTGTATTTAC
GTTGTCGCTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

89.655

100

0.897

  dprA Acinetobacter baumannii strain A118

89.125

100

0.891

  dprA Acinetobacter baylyi ADP1

70.341

100

0.711