Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6I41_RS18005 Genome accession   NZ_CP082274
Coordinates   3795493..3796980 (+) Length   495 a.a.
NCBI ID   WP_250374887.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3790493..3801980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS17980 (K6I41_17855) ribD 3791408..3792493 (-) 1086 WP_250374886.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  K6I41_RS17985 (K6I41_17860) nrdR 3792509..3792967 (-) 459 WP_004795187.1 transcriptional regulator NrdR -
  K6I41_RS17990 (K6I41_17865) - 3793132..3794526 (-) 1395 WP_004795189.1 ammonium transporter -
  K6I41_RS17995 (K6I41_17870) glnK 3794583..3794921 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  K6I41_RS18000 (K6I41_17875) - 3795200..3795427 (+) 228 WP_151767111.1 accessory factor UbiK family protein -
  K6I41_RS18005 (K6I41_17880) comM 3795493..3796980 (+) 1488 WP_250374887.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6I41_RS18010 (K6I41_17885) - 3797071..3797616 (+) 546 WP_250374888.1 NADPH-dependent FMN reductase -
  K6I41_RS18015 (K6I41_17890) - 3797747..3799180 (-) 1434 WP_250374889.1 PLP-dependent aminotransferase family protein -
  K6I41_RS18020 (K6I41_17895) - 3799292..3800068 (+) 777 WP_250374890.1 aldolase -
  K6I41_RS18025 (K6I41_17900) - 3800085..3800963 (+) 879 WP_250374891.1 dihydrodipicolinate synthase family protein -
  K6I41_RS18030 (K6I41_17905) - 3801007..3801819 (-) 813 WP_049838290.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54366.40 Da        Isoelectric Point: 7.5369

>NTDB_id=600780 K6I41_RS18005 WP_250374887.1 3795493..3796980(+) (comM) [Acinetobacter sp. AS23]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPESCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDINHLPDLECYPVSHL
KEVCEHFLGTKSLSSIEPSTTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPDSIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPVE
GSTAVRQRVISAYEQQMQRQNCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SIHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=600780 K6I41_RS18005 WP_250374887.1 3795493..3796980(+) (comM) [Acinetobacter sp. AS23]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTGGGTTTGCATGCACCTCTAATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACCATTGTCGGACTAGCAGAGGCGGCTGTAAGAGAGAGTAAAGATCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT
CTGGATTTACCAATTGCTGTAGGCATTTTAATTGCCTCTGGTCAGCTTCCCGAAAGCTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCGCTAGATGGTCATGTAAGACCAGTGTCAGGTACTTTAACTTTGGCAATGGCCTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAAGATATTAACCATTTACCGGACCTTGAGTGTTATCCGGTGAGCCATTTA
AAAGAAGTCTGTGAACATTTTCTGGGCACGAAATCTCTATCTTCGATTGAACCTTCAACAACATCAAATCAAATGCCTTA
TAAATTTGATTTGGCAGATGTAAAAGGTCAGCTACGCCCACGTCGCGCACTAGAAATAGCCGCAGCAGGGGGACATTCTC
TGCTCTTTAAAGGACCACCGGGCACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCACCTCTTTCTAAT
CAAGAAACACTTGAAGTTGCGAGTATTTACTCGATTTCGAATACACCGCATACGTTTGGACAGCGTCCTTTTCGTGCGCC
CCACCATACCGCATCAGCAATTGCACTGGTTGGGGGCGGATCTCATCCTAAACCGGGTGAAATTACCCTATCTCACTTAG
GTGTTCTATTTTTAGATGAACTTCCAGAGTTTGACAGAAAGGTGCTAGAAGTTTTACGCCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGAGCAGCTCGGCAGATTACTTATCCGGCTAACTTTCAATTGATTGCTGCGATGAACCCCTGCCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCACCTGACAGCATTAAGCGCTATCAAAACCGTATATCGGGCC
CGTTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGTTGAA
GGTTCTACGGCTGTAAGACAGCGTGTGATTTCTGCTTATGAACAACAAATGCAAAGACAAAATTGTTTAAATCAAGCGCT
TTCACCGAAGCAACTAGAACAATATGCTGTCCTTGATAGTACTTCACAGCGAATGATTGAAATGGCACAGCAACGTTTAA
ATCTATCAGCTCGTGCTTATCATCGTGTTTTACGAGTAGCGCGGACCATTGCCGATTTGGCTCAAAGCGAGATGATTCAA
AGCATTCATCTTACAGAAGCACTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.403

100

0.505
  comM Glaesserella parasuis strain SC1401

49.6

100

0.501
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  comM Haemophilus influenzae Rd KW20

48.898

100

0.493
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467