Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   K6973_RS02865 Genome accession   NZ_CP082206
Coordinates   531353..531679 (+) Length   108 a.a.
NCBI ID   WP_222819550.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 526353..536679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS02840 (K6973_02840) - 526663..529071 (+) 2409 WP_218655383.1 DNA translocase FtsK -
  K6973_RS02845 (K6973_02845) - 529140..529493 (-) 354 WP_012766635.1 DUF3397 domain-containing protein -
  K6973_RS02850 (K6973_02850) - 529828..530116 (+) 289 Protein_510 hypothetical protein -
  K6973_RS02855 (K6973_02855) - 530187..530366 (+) 180 WP_222819549.1 hypothetical protein -
  K6973_RS11420 (K6973_02860) - 530371..531356 (+) 986 Protein_512 replication initiator protein A -
  K6973_RS02865 (K6973_02865) ssbB 531353..531679 (+) 327 WP_222819550.1 single-stranded DNA-binding protein Machinery gene
  K6973_RS11425 - 531717..534387 (+) 2671 Protein_514 relaxase/mobilization nuclease domain-containing protein -
  K6973_RS02880 (K6973_02880) - 534664..535176 (-) 513 WP_115276411.1 hypothetical protein -
  K6973_RS02885 (K6973_02885) - 535189..535833 (-) 645 WP_226316582.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12227.05 Da        Isoelectric Point: 10.0095

>NTDB_id=600093 K6973_RS02865 WP_222819550.1 531353..531679(+) (ssbB) [Streptococcus dysgalactiae strain DY107]
MNNTNLIGRLTKKAELYQIPDKKTYARFTLAINRKKKAGGSGSEADFIPCIIWGKGAENLVSWIDKGTLISLEGELRTRS
YDKDGQKHFVMEVWSTFFQVLSKPVTDN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=600093 K6973_RS02865 WP_222819550.1 531353..531679(+) (ssbB) [Streptococcus dysgalactiae strain DY107]
ATGAATAACACAAACTTAATTGGACGACTGACTAAGAAAGCAGAACTTTATCAAATACCTGATAAGAAAACCTATGCTCG
CTTTACCCTAGCGATTAACCGCAAAAAGAAGGCAGGAGGTTCAGGAAGTGAGGCCGATTTCATTCCCTGCATCATCTGGG
GGAAGGGAGCTGAAAATCTTGTCAGTTGGATCGACAAAGGAACGCTTATCAGTCTAGAGGGCGAGTTACGAACAAGGAGC
TATGACAAAGATGGTCAAAAACATTTTGTCATGGAGGTTTGGTCAACCTTTTTCCAAGTCTTATCAAAGCCAGTTACTGA
CAATTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

49.533

99.074

0.491
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48

92.593

0.444
  ssbA Streptococcus mutans UA159

48

92.593

0.444
  ssbB/cilA Streptococcus mitis NCTC 12261

48

92.593

0.444
  ssbB/cilA Streptococcus mitis SK321

48

92.593

0.444
  ssbB/cilA Streptococcus pneumoniae TIGR4

48

92.593

0.444
  ssbB/cilA Streptococcus pneumoniae Rx1

47

92.593

0.435
  ssbB/cilA Streptococcus pneumoniae D39

47

92.593

0.435
  ssbB/cilA Streptococcus pneumoniae R6

47

92.593

0.435
  ssbA Bacillus subtilis subsp. subtilis str. 168

42.157

94.444

0.398