Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   K6972_RS03760 Genome accession   NZ_CP082203
Coordinates   730713..731375 (+) Length   220 a.a.
NCBI ID   WP_222812876.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 725713..736375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS03740 (K6972_03740) - 726164..727093 (-) 930 WP_222812872.1 ABC transporter substrate-binding protein -
  K6972_RS03745 (K6972_03745) - 727106..727891 (-) 786 WP_222812873.1 ABC transporter ATP-binding protein -
  K6972_RS03750 (K6972_03750) - 728043..729488 (-) 1446 WP_222812875.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  K6972_RS03755 (K6972_03755) - 729900..730646 (+) 747 WP_024385479.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  K6972_RS03760 (K6972_03760) comEA/celA/cilE 730713..731375 (+) 663 WP_222812876.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6972_RS03765 (K6972_03765) comEC/celB 731359..733596 (+) 2238 WP_222812878.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23339.10 Da        Isoelectric Point: 4.1447

>NTDB_id=599928 K6972_RS03760 WP_222812876.1 730713..731375(+) (comEA/celA/cilE) [Streptococcus suis strain NJ3]
MDTIKTYIEMLKEYKWQIALPAVAGLLLTTFLIFSQPAKSDQTGLPDFPQLEQTSNSSELVEETSTEVSEEPSQLVVDVK
GAVAKPGLYTLAAGARVNDAVEAAGGLTSQANPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSQEEKNTSLVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=599928 K6972_RS03760 WP_222812876.1 730713..731375(+) (comEA/celA/cilE) [Streptococcus suis strain NJ3]
ATGGATACGATTAAAACTTATATTGAAATGCTTAAAGAATACAAGTGGCAGATTGCTCTGCCAGCAGTTGCAGGTTTGCT
TCTGACGACATTCTTAATATTCAGCCAACCTGCCAAGTCAGATCAGACAGGACTACCAGATTTTCCACAGCTAGAGCAAA
CTTCTAATAGCTCTGAGTTGGTCGAGGAAACCAGTACAGAAGTAAGTGAGGAGCCCAGCCAGCTGGTCGTTGATGTCAAA
GGAGCGGTAGCAAAGCCAGGACTCTACACTTTAGCAGCTGGTGCGCGTGTTAATGATGCAGTTGAAGCAGCTGGCGGCTT
GACCAGTCAGGCAAACCCTAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCCAGCAAGG
ATGAAAATATCTCGGTGGTGGCCAGCACGACTGCCAGCTCTGCTATGTCCCAAGAAGAAAAAAACACCAGTCTGGTCAAT
CTGAACACGGCGACCGAGGCGGACCTGCAGACCATTTCGGGCATCGGTGCCAAGCGAGCGACAGACATTATCGCTTATCG
TGAGGCAAACGGTGGCTTCAAGTCGGTGGACGACCTCAACAATGTGTCGGGTATCGGCGACAAGACCATGGAAAGCATCC
GACCTTATGTCACGGTCGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.556

100

0.486
  comEA/celA/cilE Streptococcus pneumoniae D39

47.556

100

0.486
  comEA/celA/cilE Streptococcus pneumoniae R6

47.556

100

0.486
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.345

100

0.486
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

46.46

100

0.477
  comEA/celA/cilE Streptococcus mitis SK321

45.217

100

0.473
  comEA Streptococcus thermophilus LMD-9

58.642

73.636

0.432
  comEA Lactococcus lactis subsp. cremoris KW2

38.71

98.636

0.382
  comEA Bacillus subtilis subsp. subtilis str. 168

38.278

95

0.364