Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   K6976_RS03935 Genome accession   NZ_CP082202
Coordinates   768427..769089 (+) Length   220 a.a.
NCBI ID   WP_222760053.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763427..774089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS03915 (K6976_03915) - 763996..764925 (-) 930 WP_222760050.1 ABC transporter substrate-binding protein -
  K6976_RS03920 (K6976_03920) - 764922..765722 (-) 801 WP_044668132.1 ABC transporter ATP-binding protein -
  K6976_RS03925 (K6976_03925) - 766022..767467 (-) 1446 WP_222760051.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  K6976_RS03930 (K6976_03930) - 767614..768360 (+) 747 WP_222760052.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  K6976_RS03935 (K6976_03935) comEA/celA/cilE 768427..769089 (+) 663 WP_222760053.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6976_RS03940 (K6976_03940) comEC/celB 769073..771310 (+) 2238 WP_222760054.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23425.03 Da        Isoelectric Point: 4.0963

>NTDB_id=599876 K6976_RS03935 WP_222760053.1 768427..769089(+) (comEA/celA/cilE) [Streptococcus suis strain SS389]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFPQTEQTSSSSDLVEKNSTEASEEPSQLTVDVK
GAVEKPGLYTLEADARVNDAVEAAGGLTSQADPKSVNLAQKLSDEAVVYVASKDENISVVASTTASSAMSQEEKNTSLVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=599876 K6976_RS03935 WP_222760053.1 768427..769089(+) (comEA/celA/cilE) [Streptococcus suis strain SS389]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAGATTGCTCTTCCCGCAGTGGCTGGCTTGCT
AATGGCGACGTTCTTAATATTCAGTCAACCAGCCAAGTCTGACCAGACAGGACTGACAGATTTTCCGCAGACCGAACAAA
CTTCTAGTAGCTCTGACTTGGTCGAGAAAAACAGTACAGAAGCAAGTGAAGAGCCCAGCCAGCTAACCGTTGATGTCAAA
GGAGCGGTGGAAAAACCAGGACTCTACACTTTAGAAGCTGATGCGCGTGTTAATGATGCAGTTGAAGCAGCTGGCGGCTT
GACCAGTCAGGCAGACCCCAAGTCTGTCAATCTGGCTCAGAAGCTCAGCGATGAGGCGGTGGTCTATGTGGCCAGCAAGG
ATGAAAATATCTCGGTGGTGGCCAGCACGACTGCCAGCTCTGCTATGTCCCAAGAAGAAAAAAACACCAGTCTAGTCAAT
CTGAATACGGCGACTGAGGCCGATTTGCAGACCATTTCAGGTATTGGTGCCAAGCGAGCGACAGACATTATCGCCTATCG
TGAGGCCAATGGCGGCTTCAAATCAGTGGATGACCTCAACAATGTTTCGGGCATCGGCGACAAGACTATGGAAAGCATCC
GGCCTTATGTCACGGTCGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

48.858

99.545

0.486
  comEA/celA/cilE Streptococcus pneumoniae D39

48.858

99.545

0.486
  comEA/celA/cilE Streptococcus pneumoniae R6

48.858

99.545

0.486
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

48.858

99.545

0.486
  comEA/celA/cilE Streptococcus mitis NCTC 12261

48.858

99.545

0.486
  comEA/celA/cilE Streptococcus mitis SK321

47.534

100

0.482
  comEA Streptococcus thermophilus LMD-9

59.877

73.636

0.441
  comEA Lactococcus lactis subsp. cremoris KW2

39.171

98.636

0.386
  comEA Bacillus subtilis subsp. subtilis str. 168

39.048

95.455

0.373