Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   K6976_RS03940 Genome accession   NZ_CP082202
Coordinates   769073..771310 (+) Length   745 a.a.
NCBI ID   WP_222760054.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764073..776310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS03920 (K6976_03920) - 764922..765722 (-) 801 WP_044668132.1 ABC transporter ATP-binding protein -
  K6976_RS03925 (K6976_03925) - 766022..767467 (-) 1446 WP_222760051.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  K6976_RS03930 (K6976_03930) - 767614..768360 (+) 747 WP_222760052.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  K6976_RS03935 (K6976_03935) comEA/celA/cilE 768427..769089 (+) 663 WP_222760053.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6976_RS03940 (K6976_03940) comEC/celB 769073..771310 (+) 2238 WP_222760054.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84137.93 Da        Isoelectric Point: 6.7846

>NTDB_id=599877 K6976_RS03940 WP_222760054.1 769073..771310(+) (comEC/celB) [Streptococcus suis strain SS389]
MSRSIKLPCQPIHLAVLAVAAYFAVHSFSLFTIGLLSLVVVVFWIRQGKTVFLKTLPLLALCGLFFGCQKVQWERADQSA
PEQVTTVQVIPDTIEVNGDSLSFRGRADGQTYQVFYKLTSQEEQAYFQKLADLVQLEVEAEVSLPAGQRNFKGFDYQTYL
KTQGIYRTVKLTAIKKIVPVQSLNVFDWLSSWRRQALVYIKTNFPAPMSHYMTGLLFGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWILLRLGLTKEAVDKLQIPFSIVYAGLTGFSVSVVRSLVQKILGNMGLRKLDNFAVTVFVCLLIL
PRFLLTAGGVLTFTYAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFYAFQPLSILLTFVFSFVFDVLLLPGLSV
IFLLSPIIKITWVNGFFVFMEKIIVWVADLGFRPWILGKPSELVLLLLLVSLFLLYDFHRRKKWLLGLSLVLALLFFITK
HPLENEVTVVDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEEWQERSSQANAERTLIPYLHSRGVDRIDSLVLTHTDTD
HVGDVLEVAKQVKIGRIYVSPGSLTVPDFVATLKEINAPVHVVKVGDRLPIFDSYLEVLYPDGTGDGGNNDSIVLYGRLL
ETNFLFTGDLEQGELDLIETYPNLPVDVLKAGHHGSKGSSYPEFLDHIEAKIALVSAGENNRYKHPHQETLDRFDSRNIQ
VYRTDQQGAIRFRGWKEWRIETVRE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=599877 K6976_RS03940 WP_222760054.1 769073..771310(+) (comEC/celB) [Streptococcus suis strain SS389]
ATGTCACGGTCGATTAAGCTCCCCTGCCAGCCCATTCACCTGGCAGTATTGGCGGTGGCGGCCTACTTTGCAGTTCACTC
GTTTTCCCTCTTTACAATAGGCCTGCTGAGTCTGGTAGTAGTTGTCTTTTGGATTCGGCAAGGCAAGACAGTTTTTCTCA
AGACGCTGCCGCTTCTAGCCCTGTGCGGTCTCTTTTTCGGATGCCAGAAGGTCCAATGGGAGCGGGCAGACCAGTCAGCC
CCAGAGCAAGTCACCACTGTGCAGGTCATTCCAGATACGATTGAAGTAAACGGGGACAGCCTGTCTTTTCGTGGTCGGGC
TGACGGACAAACCTATCAGGTTTTCTATAAATTAACCAGTCAGGAGGAGCAGGCTTATTTTCAAAAGCTGGCAGACTTGG
TCCAGCTAGAAGTGGAAGCAGAGGTCAGCCTGCCAGCTGGTCAGCGGAATTTCAAGGGCTTTGACTATCAGACCTATCTG
AAAACACAGGGCATCTATCGGACTGTCAAGCTAACGGCGATTAAGAAGATTGTCCCTGTCCAGTCTTTGAATGTTTTTGA
CTGGCTATCAAGCTGGCGGAGACAGGCCTTGGTCTATATCAAAACCAATTTTCCAGCACCCATGAGCCACTACATGACAG
GGCTTTTGTTTGGGGAGCTGGATAGTGATTTTGACCAGATGAGTGACCTCTATTCTAGTCTAGGAATCATTCATCTCTTT
GCCCTGTCTGGTATGCAGGTTGGATTTTTCATCGACAAGTTTCGCTGGATTTTACTGCGTTTGGGCTTGACCAAGGAAGC
CGTAGATAAGTTGCAGATTCCCTTTTCCATTGTTTATGCTGGTTTGACAGGCTTTTCTGTGTCAGTGGTGCGGTCCTTGG
TCCAGAAAATTCTGGGTAATATGGGTTTGCGGAAGCTGGATAACTTTGCGGTGACAGTCTTTGTCTGTCTGCTGATTCTG
CCCCGATTTCTGCTGACAGCAGGCGGTGTCCTGACCTTTACCTATGCTTTTTTGCTGACGGTTTTTGATTTTGAAGACTT
GGGGCAGGTCAAAAAGGCTGCGGTGGAGAGCCTCAGTATTTCACTGGGAATTTTGCCGGTGCTTATGACCTATTTCTATG
CCTTTCAGCCTTTGTCTATCCTCTTGACCTTTGTCTTTTCCTTTGTCTTTGATGTCCTGCTCTTGCCAGGCTTGTCGGTC
ATTTTTCTCTTATCACCAATTATCAAGATTACCTGGGTCAACGGATTTTTCGTTTTTATGGAGAAAATCATTGTCTGGGT
GGCGGATTTGGGCTTTCGGCCTTGGATACTGGGCAAGCCGTCTGAGCTGGTCCTCTTGCTTTTGCTGGTCAGCCTCTTCT
TGCTCTACGATTTCCACAGGAGAAAGAAATGGCTTCTAGGACTGAGCTTGGTCCTCGCTCTACTATTTTTCATCACCAAA
CACCCGCTGGAAAACGAGGTGACGGTGGTGGACATCGGGCAGGGGGACAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTTCTGATTGATGTGGGTGGTCGGGTCGATTTTGCGGCCAAGGAGGAGTGGCAGGAGCGGTCTTCGCAGGCAAATGCAG
AGCGGACATTGATTCCCTATCTGCATAGTCGGGGCGTGGACAGGATTGATAGTCTAGTCCTGACCCATACCGACACTGAC
CATGTGGGCGATGTGTTGGAAGTGGCTAAGCAGGTGAAAATTGGACGGATTTACGTGTCGCCAGGAAGCCTGACAGTGCC
TGACTTTGTAGCGACTTTGAAAGAAATCAATGCTCCTGTCCATGTGGTAAAAGTGGGCGACCGCCTACCAATTTTTGACT
CTTACCTGGAAGTCCTTTATCCAGACGGGACAGGAGACGGTGGCAATAATGACTCCATTGTCCTTTACGGTCGCTTGTTG
GAAACTAACTTTCTCTTTACAGGAGACCTGGAGCAAGGGGAGTTGGACTTGATAGAAACCTATCCCAACCTGCCTGTCGA
TGTCCTCAAAGCCGGTCACCACGGCTCCAAAGGTTCTTCCTATCCTGAATTTTTGGACCATATCGAAGCCAAGATTGCCT
TGGTATCTGCTGGAGAAAATAACCGCTACAAGCATCCCCATCAAGAAACCTTGGACCGCTTTGACAGTCGGAATATCCAA
GTCTATCGTACCGACCAGCAAGGAGCTATTCGCTTCCGAGGCTGGAAGGAGTGGAGGATTGAGACGGTGAGGGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-175)

Competence protein (Competence)

(215-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(493-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

54.217

100

0.544
  comEC/celB Streptococcus mitis NCTC 12261

53.235

99.597

0.53
  comEC/celB Streptococcus pneumoniae TIGR4

52.355

99.732

0.522
  comEC/celB Streptococcus pneumoniae Rx1

52.086

99.732

0.519
  comEC/celB Streptococcus pneumoniae D39

52.086

99.732

0.519
  comEC/celB Streptococcus pneumoniae R6

52.086

99.732

0.519
  comEC Lactococcus lactis subsp. cremoris KW2

48.859

100

0.489