Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   K5J94_RS01780 Genome accession   NZ_CP081502
Coordinates   336282..337034 (+) Length   250 a.a.
NCBI ID   WP_221913285.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 331282..342034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS01780 comE/blpR 336282..337034 (+) 753 WP_221913285.1 response regulator transcription factor Regulator
  K5J94_RS01785 - 337065..337295 (+) 231 WP_221913287.1 GHKL domain-containing protein -
  K5J94_RS01790 - 337893..338098 (+) 206 Protein_299 ComC/BlpC family peptide pheromone/bacteriocin -
  K5J94_RS01795 - 338171..339020 (+) 850 Protein_300 ABC transporter ATP-binding protein -
  K5J94_RS01805 - 339026..340181 (+) 1156 Protein_301 ABC transporter permease subunit -
  K5J94_RS01810 - 340411..341458 (+) 1048 Protein_302 acyltransferase family protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 29538.20 Da        Isoelectric Point: 8.8127

>NTDB_id=597040 K5J94_RS01780 WP_221913285.1 336282..337034(+) (comE/blpR) [Streptococcus halichoeri strain Shali_VAS-CPH]
MNIFILEDNFIQQAYLEKIIEEVKCRRNIHSKTINTFEKPAQLLESICEKGMHNLFFLDIEIKNEERKGLEVARQIRQID
PYAQIVFVTNHSELMPLTFRYQVSALDYIDKELSKEKFSQRVENVLLYASSACSKTLLEDSFYFKSRYNQVQVPFNDILY
IETSLRSHRVVLYTEKDRMEFTATLENVLKQEPRLFQCHRSFLVNPLNVFKVDKSTKLIYFKNGANCLISRNKIKDIMVV
IEKSQRGRGI

Nucleotide


Download         Length: 753 bp        

>NTDB_id=597040 K5J94_RS01780 WP_221913285.1 336282..337034(+) (comE/blpR) [Streptococcus halichoeri strain Shali_VAS-CPH]
GTGAATATTTTTATTTTAGAGGATAATTTTATTCAACAGGCATATTTAGAGAAAATAATTGAGGAAGTTAAATGTAGGAG
AAATATACATAGCAAAACGATCAATACCTTTGAAAAACCAGCTCAATTACTAGAATCAATCTGTGAAAAAGGTATGCATA
ATTTATTTTTCTTAGATATTGAAATAAAAAATGAAGAGCGAAAAGGTTTAGAGGTCGCAAGGCAGATTAGACAAATTGAC
CCCTATGCTCAGATTGTTTTTGTCACAAATCATTCAGAATTGATGCCTTTAACGTTTCGTTATCAAGTATCAGCTTTAGA
TTATATTGATAAAGAGCTATCCAAGGAGAAATTTAGTCAAAGAGTTGAAAACGTTTTATTATATGCCAGTAGCGCTTGCA
GTAAAACGTTACTGGAAGATTCTTTTTATTTTAAATCACGCTATAATCAAGTACAAGTGCCTTTTAACGATATCCTTTAT
ATAGAAACGTCATTAAGATCACATAGAGTAGTCCTTTATACTGAAAAAGATCGAATGGAATTTACAGCTACTTTGGAAAA
TGTTTTAAAACAAGAACCCAGACTTTTCCAATGCCATCGCTCTTTTTTAGTAAATCCCTTAAATGTTTTTAAAGTGGATA
AATCAACTAAACTAATCTATTTTAAAAATGGTGCAAATTGTCTGATTTCTCGTAATAAAATAAAAGACATCATGGTAGTA
ATAGAGAAAAGTCAAAGAGGTAGAGGAATATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-122)

LytTr DNA-binding domain (LytTR)

(151-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

51.406

99.6

0.512
  comE/comE1 Streptococcus equinus JB1

42.678

95.6

0.408
  comE Streptococcus mitis NCTC 12261

37.402

100

0.38
  comE Streptococcus pneumoniae R6

37.402

100

0.38
  comE Streptococcus pneumoniae TIGR4

37.402

100

0.38
  comE Streptococcus mitis SK321

37.402

100

0.38
  comE Streptococcus pneumoniae Rx1

37.402

100

0.38
  comE Streptococcus pneumoniae D39

37.402

100

0.38
  comE Streptococcus infantis strain Atu-4

35.827

100

0.364
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

37.657

95.6

0.36
  comE/comE2 Streptococcus gordonii strain NCTC7865

37.657

95.6

0.36