Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   K5J94_RS01030 Genome accession   NZ_CP081502
Coordinates   206892..207833 (-) Length   313 a.a.
NCBI ID   WP_159547913.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201892..212833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS00995 comYH 202844..203800 (-) 957 WP_221913220.1 class I SAM-dependent methyltransferase Machinery gene
  K5J94_RS01000 comGG 204001..204426 (-) 426 WP_159544717.1 competence type IV pilus minor pilin ComGG -
  K5J94_RS01005 comGF 204416..204865 (-) 450 WP_221913222.1 competence type IV pilus minor pilin ComGF -
  K5J94_RS01010 comGE 204819..205178 (-) 360 WP_159560368.1 competence type IV pilus minor pilin ComGE -
  K5J94_RS01015 comGD 205132..205578 (-) 447 WP_159563948.1 competence type IV pilus minor pilin ComGD -
  K5J94_RS01020 comGC/cglC 205596..205925 (-) 330 WP_269437354.1 competence type IV pilus major pilin ComGC Machinery gene
  K5J94_RS01025 comGB 205925..206947 (-) 1023 WP_221913224.1 competence type IV pilus assembly protein ComGB -
  K5J94_RS01030 comYA 206892..207833 (-) 942 WP_159547913.1 competence type IV pilus ATPase ComGA Machinery gene
  K5J94_RS01035 - 207897..208259 (-) 363 WP_159544705.1 DUF1033 family protein -
  K5J94_RS01040 rpoC 208543..212184 (-) 3642 WP_159547909.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34817.11 Da        Isoelectric Point: 8.8649

>NTDB_id=597036 K5J94_RS01030 WP_159547913.1 206892..207833(-) (comYA) [Streptococcus halichoeri strain Shali_VAS-CPH]
MVKGFTQQLLQEAIAAGAEDLYLLPYKKTYQIYIKTLAGRKHLSAQASELMLQVISHLKFLSGMNVGEKRRSQLGACTYH
LPDHQKIRLRLSTVGDYQGRESLVIRLLQDGSRELAYWGDGWSQVLTKIKGRGLYLFAGPVGSGKTTLMHALAREKFAKQ
QMIAIEDPVEIQNDSMLQLQVNTTIGMTYDELIKLSLRHRPDLLIIGEIRDPTTAAAAVRASLTGAVVFSTIHAKSIPGV
FARLLELGVSRKELSHTLSAIIYQRLLGGKGVIDSCASDYENYSGNAWNQQIQALYEEGLISKDQYQTETLDC

Nucleotide


Download         Length: 942 bp        

>NTDB_id=597036 K5J94_RS01030 WP_159547913.1 206892..207833(-) (comYA) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGGTTAAAGGATTTACACAACAATTACTACAAGAAGCGATTGCTGCTGGAGCAGAAGATCTTTATCTTTTACCGTATAA
AAAGACTTATCAGATTTACATAAAAACACTTGCGGGAAGAAAGCACCTCAGTGCACAAGCAAGCGAGCTAATGCTCCAAG
TCATTAGCCATCTGAAATTCCTCTCAGGGATGAACGTTGGTGAAAAACGTAGAAGCCAGCTGGGAGCCTGTACTTATCAC
CTACCAGATCATCAAAAAATAAGGCTGCGCTTATCAACGGTTGGAGACTATCAAGGACGGGAAAGCTTGGTCATTCGGCT
CTTACAGGATGGCTCTAGAGAATTGGCTTATTGGGGTGATGGCTGGTCACAAGTCTTAACTAAGATTAAAGGACGCGGAC
TCTACTTGTTTGCAGGGCCAGTGGGTTCAGGCAAAACCACATTGATGCATGCCCTTGCTCGGGAAAAGTTTGCCAAGCAG
CAAATGATTGCCATTGAAGATCCCGTTGAGATCCAAAATGACAGCATGCTTCAGCTCCAAGTCAATACCACGATTGGCAT
GACCTATGATGAGCTCATCAAATTATCCCTTAGACATCGCCCAGATTTATTAATTATTGGTGAGATTCGTGACCCTACTA
CGGCTGCGGCAGCAGTTCGGGCTAGTCTAACGGGAGCTGTGGTTTTCTCAACTATTCATGCTAAGAGTATCCCCGGCGTC
TTTGCCCGCCTCCTTGAATTGGGCGTTAGTCGCAAAGAGCTATCGCATACCTTATCAGCTATTATCTACCAGCGATTATT
AGGAGGAAAGGGGGTCATCGATAGCTGTGCCTCAGATTATGAAAACTATTCAGGAAATGCATGGAATCAACAGATTCAAG
CACTCTATGAAGAAGGTCTTATTTCAAAAGATCAATATCAAACCGAAACGCTTGACTGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

56.592

99.361

0.562
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

56.774

99.042

0.562
  comYA Streptococcus mutans UA140

55.128

99.681

0.55
  comYA Streptococcus mutans UA159

55.128

99.681

0.55
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

54.984

99.361

0.546
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

54.662

99.361

0.543
  comGA/cglA/cilD Streptococcus pneumoniae D39

54.662

99.361

0.543
  comGA/cglA/cilD Streptococcus pneumoniae R6

54.662

99.361

0.543
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

54.662

99.361

0.543
  comGA Lactococcus lactis subsp. cremoris KW2

53.376

99.361

0.53