Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   K5J94_RS01020 Genome accession   NZ_CP081502
Coordinates   205596..205925 (-) Length   109 a.a.
NCBI ID   WP_269437354.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200596..210925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS00990 - 201597..202787 (-) 1191 WP_159544721.1 acetate kinase -
  K5J94_RS00995 comYH 202844..203800 (-) 957 WP_221913220.1 class I SAM-dependent methyltransferase Machinery gene
  K5J94_RS01000 comGG 204001..204426 (-) 426 WP_159544717.1 competence type IV pilus minor pilin ComGG -
  K5J94_RS01005 comGF 204416..204865 (-) 450 WP_221913222.1 competence type IV pilus minor pilin ComGF -
  K5J94_RS01010 comGE 204819..205178 (-) 360 WP_159560368.1 competence type IV pilus minor pilin ComGE -
  K5J94_RS01015 comGD 205132..205578 (-) 447 WP_159563948.1 competence type IV pilus minor pilin ComGD -
  K5J94_RS01020 comGC/cglC 205596..205925 (-) 330 WP_269437354.1 competence type IV pilus major pilin ComGC Machinery gene
  K5J94_RS01025 comGB 205925..206947 (-) 1023 WP_221913224.1 competence type IV pilus assembly protein ComGB -
  K5J94_RS01030 comYA 206892..207833 (-) 942 WP_159547913.1 competence type IV pilus ATPase ComGA Machinery gene
  K5J94_RS01035 - 207897..208259 (-) 363 WP_159544705.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12398.73 Da        Isoelectric Point: 10.2914

>NTDB_id=597035 K5J94_RS01020 WP_269437354.1 205596..205925(-) (comGC/cglC) [Streptococcus halichoeri strain Shali_VAS-CPH]
MTKHRTMLRLNKPVPAFTLLEMLLVLIVISVLMLLFIPNLSKQKAKITDTGNAAVVKVVENQAELYELTQGQKASLAALK
KEGSLSDKQVQAYKDYYEKHKKQERKLLD

Nucleotide


Download         Length: 330 bp        

>NTDB_id=597035 K5J94_RS01020 WP_269437354.1 205596..205925(-) (comGC/cglC) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGACCAAACACCGCACAATGCTAAGGCTCAATAAGCCTGTTCCTGCTTTTACTCTTTTAGAAATGTTACTGGTTTTGAT
TGTCATCAGTGTTTTGATGCTTTTGTTTATCCCAAATTTAAGTAAGCAAAAGGCCAAGATTACAGACACTGGCAATGCTG
CCGTTGTCAAGGTAGTGGAAAATCAGGCAGAATTGTATGAGCTAACGCAGGGGCAAAAAGCCAGTCTTGCGGCATTAAAG
AAAGAGGGAAGCCTCAGTGATAAGCAGGTTCAGGCTTACAAGGATTATTATGAAAAACACAAAAAACAAGAACGCAAGCT
TTTAGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis SK321

53.211

100

0.532
  comGC/cglC Streptococcus pneumoniae Rx1

53.211

100

0.532
  comGC/cglC Streptococcus pneumoniae D39

53.211

100

0.532
  comGC/cglC Streptococcus pneumoniae R6

53.211

100

0.532
  comGC/cglC Streptococcus pneumoniae TIGR4

53.211

100

0.532
  comYC Streptococcus gordonii str. Challis substr. CH1

60.215

85.321

0.514
  comGC/cglC Streptococcus mitis NCTC 12261

55

91.743

0.505
  comYC Streptococcus mutans UA140

55.208

88.073

0.486
  comYC Streptococcus mutans UA159

55.208

88.073

0.486
  comGC Lactococcus lactis subsp. cremoris KW2

54.737

87.156

0.477
  comYC Streptococcus suis isolate S10

55

73.394

0.404