Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   M8779_RS00365 Genome accession   NZ_CP097846
Coordinates   72828..72971 (-) Length   47 a.a.
NCBI ID   WP_003691943.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67828..77971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS00345 (M8779_00345) tyrS 68832..70127 (+) 1296 WP_003687313.1 tyrosine--tRNA ligase -
  M8779_RS00350 (M8779_00350) - 70432..70602 (-) 171 WP_003704136.1 hypothetical protein -
  M8779_RS00355 (M8779_00355) - 70616..71317 (-) 702 WP_252295729.1 opacity family porin -
  M8779_RS00360 (M8779_00360) pilE 71957..72457 (-) 501 WP_252295645.1 pilin Machinery gene
  M8779_RS00365 (M8779_00365) pilE 72828..72971 (-) 144 WP_003691943.1 hypothetical protein Machinery gene
  M8779_RS00370 (M8779_00370) - 73436..73759 (-) 324 Protein_73 pilin -
  M8779_RS00375 (M8779_00375) - 73725..74177 (-) 453 Protein_74 pilin -
  M8779_RS00380 (M8779_00380) lpxC 74306..75229 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  M8779_RS00390 (M8779_00390) pilE 75896..76204 (-) 309 WP_269460796.1 pilin Machinery gene
  M8779_RS00395 (M8779_00395) - 76261..76611 (-) 351 Protein_77 pilin -
  M8779_RS00400 (M8779_00400) - 76652..77002 (-) 351 Protein_78 pilin -
  M8779_RS00405 (M8779_00405) - 77043..77429 (-) 387 Protein_79 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5034.54 Da        Isoelectric Point: 7.2428

>NTDB_id=596673 M8779_RS00365 WP_003691943.1 72828..72971(-) (pilE) [Neisseria gonorrhoeae strain AT159]
MTGFNDAAGNDKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=596673 M8779_RS00365 WP_003691943.1 72828..72971(-) (pilE) [Neisseria gonorrhoeae strain AT159]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447